TCONS_00020139-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020139-protein
Unique NameTCONS_00020139-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020139-protein ID=TCONS_00020139-protein|Name=TCONS_00020139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1397bp
MVDIHALRVIVLEKCHXQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCI
ARNRAGEMSRFQDFVVYEKVLFKDEPKDTSVLYKHATSLACLATGFPAPQ
IIWMKKSPDDFFEPIQLTNRVQQLNNGTLHITMTTGLDDGEYACKAFFDT
KQPVFIPPKMSRTAHVKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTT
QLSVKWFMNGAIIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRD
NATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAG
YNGNLDISEYIIQIKRQNDESDLILWTDAQTYSVAVSSVPYRVVNLHPGT
QYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTIVAIAKDKFLLQ
WKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTEYTLTNLYQY
TAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVI
TWKAIPQNAVNGVLKGYTVQYTDIERSKHYQTSVKRLQASLTNLKAFTRY
QIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRP
PLEKNGILLNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWM
SAVTSKGEGNFTEQRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAV
GYPKPMITWSNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAM
NSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGS
TTIKNHVFYIIENQHSDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENA
IGIGSMTSSMKFIIAHSNNAFESGSVIQMYAAPLVAQKQNKKPSSLQRFL
KPILISAVAFVTLLMVLLLVASYDREEHRMREPRCSRLICRCSCKQHKEY
NPAPYGEPGLLWPWNIKQNRHSGAFDMKDELLPNDTIEMKYCNGTAFNYN
ALQQNGNASGGSLGRPKMQNTNKFNDFEPVVLFTPSKTPDNHSFAAGNPQ
PKLSNGNKRGAGSDVGVRVAPPRTQAINNTAERPISSRYASTPSIIEKYF
QSQEQCGNTALKQNGYGNRFATGDDNVRNSILTEDSIDFTELDGGGVNSQ
ITAPKDNIQQIEQLPVSPPEYNELYSDEPETGDPSKPSPPNYRDIISSLS
DYSDAPRALFKKDGEPPRRGKRNRKSLDSLLLKTLEDIEEQQILTNHANV
SNTPALERHVAIVRDALQKATRSFDSVSSTCSSSVGELRRAFEFGKKYGL
QNYGEIPNYLQESMDDLTLDETNEEFDFAEHEKLLDLMALTNFSEQPRSS
NDIAVKIPLPVRLTDSDEESDPDDLDEYEQDGLNGYVKKENPTLSLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011313XLOC_011313Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020139TCONS_00020139Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR003599Ig_sub
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 768..854
e-value: 19.0
score: 9.0
coord: 578..659
e-value: 2.6E-7
score: 40.3
coord: 482..563
e-value: 3.3E-8
score: 43.3
coord: 381..466
e-value: 7.2E-10
score: 48.8
coord: 277..365
e-value: 2.0E-12
score: 57.3
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 382..469
e-value: 4.1E-14
score: 52.6
coord: 580..661
e-value: 5.2E-10
score: 39.4
coord: 282..368
e-value: 9.7E-12
score: 45.0
coord: 484..566
e-value: 1.2E-10
score: 41.5
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 484..576
score: 18.675
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 383..479
score: 23.282
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 580..674
score: 16.119
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 770..867
score: 11.219
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 276..378
score: 19.558
IPR003961Fibronectin type IIICDDcd00063FN3coord: 277..375
e-value: 1.29511E-14
score: 70.9883
IPR003961Fibronectin type IIICDDcd00063FN3coord: 484..573
e-value: 3.63734E-13
score: 66.7511
IPR003961Fibronectin type IIICDDcd00063FN3coord: 578..669
e-value: 6.3323E-11
score: 59.8175
IPR003961Fibronectin type IIICDDcd00063FN3coord: 382..476
e-value: 2.62466E-15
score: 72.9143
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 759..863
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 481..674
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 275..481
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 682..765
e-value: 6.7E-7
score: 38.9
coord: 179..274
e-value: 2.6E-5
score: 33.6
coord: 76..171
e-value: 6.6
score: 13.0
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 185..263
e-value: 0.043
score: 20.2
coord: 688..754
e-value: 5.0E-6
score: 36.0
coord: 82..151
e-value: 0.018
score: 23.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 573..678
e-value: 8.8E-18
score: 63.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 170..278
e-value: 2.0E-16
score: 59.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 68..169
e-value: 2.3E-12
score: 46.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 12..67
e-value: 1.2E-5
score: 24.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 477..572
e-value: 4.9E-19
score: 68.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 279..376
e-value: 9.3E-20
score: 70.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 773..890
e-value: 7.1E-5
score: 22.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 377..476
e-value: 2.4E-22
score: 78.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 679..772
e-value: 1.1E-13
score: 50.8
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 179..269
e-value: 8.6E-9
score: 35.3
coord: 72..146
e-value: 2.4E-6
score: 27.4
coord: 689..764
e-value: 3.1E-9
score: 36.7
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 76..146
score: 9.174
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 674..765
score: 8.883
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 171..256
score: 11.188
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 17..69
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 183..280
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 685..772
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 45..147
NoneNo IPR availableCDDcd00096Igcoord: 190..270
e-value: 1.98548E-7
score: 49.4099

Blast
[Close]
BLAST of TCONS_00020139-protein vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2)

HSP 1 Score: 400.208 bits (1027), Expect = 4.358e-115
Identity = 262/841 (31.15%), Postives = 417/841 (49.58%), Query Frame = 0 
Query:   30 YTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKVLFKDEPKDTSVLYKHATSLACLATGFPAPQIIWM--KKSPDDFFEPIQLTNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHVKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGAIIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVVNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTIVAIAKDKFLLQWKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTE---YTLTNLYQYTAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAIPQNAVNGVLKGYTVQY----TDIERSKHYQTSVKRLQASLTNLKAFTRYQIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKNGILLNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTSKGEGNFTEQRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKPMITW---SNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKNHVFYIIENQHSDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGSMT 857
            +TS++ I  ++  H+G YTCIARN A  +      +V     F  +P+D   +Y  A  L C A G+P P I+W   K +    F+PI L  R+Q L+NG+L I      D G Y CK   D    V      S++ ++ VK+PA ++ S P      +G    + C+  G   + V+W     II+   ++Y + T E +G       + STL I   +  D+  + C   N YG ++    + V+E P  P I  + D    ++ L WT G++GN  I+ Y I+ K ++D      W  AQ T  V+       ++++HP + Y +R+ AKNRIG S+ S+    +  E AP  PPQ V +  I+     + WK P K  +NGI+  YQI +   S+    +  I+++ +  +   YTL NL ++T Y + +QA  + G GP S  +  TTLE VPS  P +V+A A S   I I+W  + + A+NG+L+G+ V Y     D E  +    +  +    L  L+ +T Y I+V A+T+ G GV S +    T ED PG PA  KA  A+   + ++W PPL+ NGI+  Y ++    +     +    P    YRI +L   R+Y+ W+ AVTS G GN +E          PARI+T     +  P   D+ LPC AVG P P + W   SN  PS    ++ RR +  +   ++  +  +  G Y+C A N++GSD  ++ L+VQVPP  P    S          ++ ++W+ G NGGS +I+ ++    E+    W    +   +  + + N+       F ++++N +G G ++
Sbjct:  650 FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSG-TVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVT-IDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSS-----SITLSWLPGDNGGS-SIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS 1463
The following BLAST results are available for this feature:
BLAST of TCONS_00020139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSCAM4.358e-11531.15Down syndrome cell adhesion molecule OS=Homo sapie... [more]
back to top