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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020139 ID=TCONS_00020139|Name=TCONS_00020139|organism=Clytia hemisphaerica|type=transcript|length=5871bpRun BLAST on NCBI protein sequence of TCONS_00020139-protein >TCONS_00020139-protein ID=TCONS_00020139-protein|Name=TCONS_00020139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1397bp MVDIHALRVIVLEKCHXQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIRun BLAST on NCBI transcript from alignment at sc0000349:309620..321406- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020139 ID=TCONS_00020139|Name=TCONS_00020139|organism=Clytia hemisphaerica|type=transcript|length=11787bp|location=Sequence derived from alignment at sc0000349:309620..321406- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000349:309620..321406- >TCONS_00020139 ID=TCONS_00020139|Name=TCONS_00020139|organism=Clytia hemisphaerica|type=CDS|length=54522bp|location=Sequence derived from alignment at sc0000349:309620..321406- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020139 vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2) HSP 1 Score: 400.208 bits (1027), Expect = 6.048e-113 Identity = 262/841 (31.15%), Postives = 417/841 (49.58%), Query Frame = 1
Query: 1192 YTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKVLFKDEPKDTSVLYKHATSLACLATGFPAPQIIWM--KKSPDDFFEPIQLTNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHVKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGAIIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVVNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTIVAIAKDKFLLQWKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTE---YTLTNLYQYTAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAIPQNAVNGVLKGYTVQY----TDIERSKHYQTSVKRLQASLTNLKAFTRYQIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKNGILLNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTSKGEGNFTEQRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKPMITW---SNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKNHVFYIIENQHSDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGSMT 3675
+TS++ I ++ H+G YTCIARN A + +V F +P+D +Y A L C A G+P P I+W K + F+PI L R+Q L+NG+L I D G Y CK D V S++ ++ VK+PA ++ S P +G + C+ G + V+W II+ ++Y + T E +G + STL I + D+ + C N YG ++ + V+E P P I + D ++ L WT G++GN I+ Y I+ K ++D W AQ T V+ ++++HP + Y +R+ AKNRIG S+ S+ + E AP PPQ V + I+ + WK P K +NGI+ YQI + S+ + I+++ + + YTL NL ++T Y + +QA + G GP S + TTLE VPS P +V+A A S I I+W + + A+NG+L+G+ V Y D E + + + L L+ +T Y I+V A+T+ G GV S + T ED PG PA KA A+ + ++W PPL+ NGI+ Y ++ + + P YRI +L R+Y+ W+ AVTS G GN +E PARI+T + P D+ LPC AVG P P + W SN PS ++ RR + + ++ + + G Y+C A N++GSD ++ L+VQVPP P S ++ ++W+ G NGGS +I+ ++ E+ W + + + + N+ F ++++N +G G ++
Sbjct: 650 FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSG-TVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVT-IDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSS-----SITLSWLPGDNGGS-SIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS 1463 HSP 2 Score: 123.635 bits (309), Expect = 8.549e-28 Identity = 98/359 (27.30%), Postives = 160/359 (44.57%), Query Frame = 3
Query: 117 FKCKAIGSMPIIYHWFKNGQKLSSETDVTITSGEKGVGSVLEIQDIDIK-DEGSYQCFAFNHFESVQYSVQLVVDSVLPNITSISPGRSINEGDALSIVCQYTALPRPKQTWMYENRPVEES-----SNIVINSNGTFSELRVPKFTMAMSGRYQCLVENRVGLDSKYVNIKIEGKPLITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVT-SSQSMKVLSNGTLLIGSFSAN-EEGEFECH--AQNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKD-----GILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEM 1148
C G+ W++NG+ L+ +V IT G+ I D +K D G+YQCF S Q VQ+V++ P I S + ++ + +S++C P P TW ++ P+ + S ++ + S L + + G Y+C N G+ I + G I +++ + G+ +HC V G P ++W + + + + + + +NGTL + +EGE+ C+ Q TS+ V+V PP I P + G RV C G +TITW KD G L ID I+ +TS++ I ++ H+G YTCIARN A +
Sbjct: 333 LSCSVTGTEDQELSWYRNGEILNPGKNVRIT----GINHENLIMDHMVKSDGGAYQCFVRKDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNIT-AIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLS-TSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDL-PITITWQKDGRPIPGSLGVTIDNID------FTSSLRISNLSLMHNGNYTCIARNEAAAV 678 The following BLAST results are available for this feature:
BLAST of TCONS_00020139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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