TCONS_00020839-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020839-protein
Unique Name	TCONS_00020839-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1212

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020839-protein ID=TCONS_00020839-protein|Name=TCONS_00020839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1212bp
YSMPFYLIVLGRGGDITRYNGFDYYFSSEGKNWQNAENDCIARGGHLTSV
HSQAENNFLNQQISTRYGSQARVWYGGFRRPDLKFAWSDGTDFSWTKWGE
GEPNNHGGTENCLTRWIFDGIWNDLTCNHANYYICKLDIATTTTSTTTTT
TTPPTPPLPHIVNDTCQPHFLDASSTIWQRSTGFSIEPGASGQRCDRQIK
TGWYRFKSPAGSIMPEQCPNINSCGTTLPIWLNGAHPTEVNVSTSVPVCV
VYPGNNCCGHTYNIDIKRCQDEVQGEDYFVYNLPATPGCPMSYCIGNETR
CPDGERSPNGFSPGCTNEFPKLKGKPEVTVGSHDNRIRFTCDFEPEQIKN
NAKYKVSWYTRTSDGNAELVKTETLHGNQTKSFLQNTDGQKFCLQKNFFC
EVSSVFPDSEDISDTKRSDDFFAGIKISPTTIDLAENDAPRELKFETTVP
ITCEPFFPDCAVDLEVAQTQNDGVLSFCKISFKKGSAGQVKTMEVVAKRD
FIDDGDKSMKIKFHIPLTLFVPDWNCHEELPDVTVHTKDVTTANCYSNGD
PHITTFDNRRFDHYRVGDYIYTKSGARLFEVHVRTFVCASVSCNCGVAAR
EGDDVMVVDMCRDNVPRARFASTVEPQPGTKINRSPDGKIFEFSFPSGAS
VRFEARRWFGDTYYANIVVKLPSDDYKNTSGLCGIWDSSSTNDLTGKEGQ
QFQGRGQAPLGFTESWKLTPGSSLFYHRGGPQKCLAERIKTYCFCSENAQ
NNQVINCTTNAIVDRPKYILGNNQYQELNFPGAEHCGKRRRRRRDVETQK
TLILPDDGEDAVYFYDPIQPNKTIPSFPTPNGITEERAILNCDKALRESE
SGKVCLELVPDLDIDGIIESCVEDTKILDDIEVATSSAVGVMKDACEEVT
LRNITLWKTDDTTGQLQPPKAVAEILCPNECSGNGYCANATCVCDEGYLS
ADCSIHEDDPPVLVKVAFSGLCDIRQKDCVRTRVIGRNFINSESLACQTK
ALKFTTDHSIDEEFNGEATIQSSELLSFAELSCDLPDVPVDIVFSSTQKG
IPVGGFDIRLSNNGENFSNESSQFVVYNSKCLQCNATTKDCLWKEDSCRV
NNYCFGKGEAHPLDWCDVCVGENAFEPRYDNLAPVFRQTEPIKVFKDQEM
SFVIPVFDPEQKRMKYELIEPPSPPLGMEISNGGVLTWTPKEENKTFSAV
PLAKSANQKHPQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011687	XLOC_011687	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020839	TCONS_00020839	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001846	VWF_type-D
IPR001304	C-type_lectin-like
IPR016186	C-type_lectin-like/link
IPR013783	Ig-like_fold
IPR018378	C-type_lectin_CS
IPR007110	Ig-like_dom
IPR016187	CTDL_fold

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001846	von Willebrand factor, type D domain	SMART	SM00216	VWD_2	coord: 538..699 e-value: 0.0082 score: 15.1
IPR001846	von Willebrand factor, type D domain	PFAM	PF00094	VWD	coord: 545..699 e-value: 4.4E-8 score: 33.4
IPR001846	von Willebrand factor, type D domain	PROSITE	PS51233	VWFD	coord: 544..760 score: 18.152
IPR001304	C-type lectin-like	SMART	SM00034	CLECT_2	coord: 12..136 e-value: 1.6E-24 score: 97.5
IPR001304	C-type lectin-like	PFAM	PF00059	Lectin_C	coord: 30..136 e-value: 5.6E-16 score: 59.1
IPR001304	C-type lectin-like	PROSITE	PS50041	C_TYPE_LECTIN_2	coord: 19..136 score: 23.604
None	No IPR available	GENE3D	2.60.40.1510		coord: 344..954 e-value: 4.1E-7 score: 29.9
None	No IPR available	CDD	cd00037	CLECT	coord: 24..136 e-value: 2.98206E-26 score: 105.009
IPR016186	C-type lectin-like/link domain	GENE3D	3.10.100.10		coord: 13..149 e-value: 9.4E-33 score: 112.7
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 1125..1209 e-value: 1.8E-4 score: 21.6
IPR018378	C-type lectin, conserved site	PROSITE	PS00615	C_TYPE_LECTIN_1	coord: 112..135
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 320..413 score: 6.742
IPR016187	C-type lectin fold	SUPERFAMILY	56436	C-type lectin-like	coord: 19..151

Blast

[Close]

BLAST of TCONS_00020839-protein vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4)

HSP 1 Score: 221.861 bits (564), Expect = 1.401e-58
Identity = 175/577 (30.33%), Postives = 261/577 (45.23%), Query Frame = 0

Query:  195 CDRQIKTGWYRF---KSPAGSIMPEQCPNINSCGTTLPIWLNG------AHPTEVNVSTSVPV--CVVYPGNNCCGHTYNIDIKRCQDEVQGEDYFVYNLPATPGCPMSYCIG--NETR---CPDGERSPNGFSPGCTNEF-----PKLKGKPEVTVGSHDNRIRFTCDFEPEQIKNNAKYKVSWYTRTSDGNAELVKTETLHGNQTKSF-LQNTDGQKFCLQKNFFCEVSSVFPDSEDISDTK-RSDDFFAGIKISPTTIDLAENDAPRELKFETTVPITCEPFFP---DCAVDLEVAQTQNDG--------VLSFCKISFKKGSAGQVKT-----MEVVAKRDFIDDGDKSMKIKFHIPLTLFVPDWNCHEELPD-VTVHTKDVTTANCYSNGDPHITTFDNRRFDHYRVGDYIYTKSGARLFEVHVRTFVCAS----VSCNCGVAAREGDDVMVVDMCRDNVPRAR---FASTVEPQPGTKINRSPDGKIFEFSFPSGASVRFEARRWFGDTYYANIVVKLPSDDYKNTSGLCGIWDSSSTNDLTGKEGQQFQGRGQAPLGFTESWKLTPGSSL 724
            CD  +  GWYRF     PA   MP +C  +N CGT  PIWL+         P E+   T+      +     +CC     + ++ C +      + VY L  T GC M YC    ++ R   C   E    G    C  +      P   G+PEV V   ++R+   C F+    KN+  + ++W    S  +++ VK E       ++F L   DG    L    FC  S  F ++  +      S +FFAG K+ P    ++E+     L+ E+TVPI C  F     +C + L++ +T   G         LS C +   + S+    T     +   A  DF  DGD+   I    P+      WN    +PD + +  KDV TA CY+  DPHI TFD R +D+++ G ++  KS +R FEVHVR + C S    VSCNCG  A+EG D++  DMC   +  ++   F  + +     KI+ S  G+     F SGA +R +   W       ++ ++ PS DY+NT GLCG +D +  ND   K G Q        + F   W++ PG S+
Sbjct:   55 CDHSLSPGWYRFLILDRPAE--MPTKCVEMNHCGTQAPIWLSLRDSETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVYLLQPTQGC-MGYCAEAISDARLHPCGSDETETGG---DCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAW----SRLSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKL-KTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLWN--NYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEW-----GMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPGKSM 606

HSP 2 Score: 155.221 bits (391), Expect = 6.224e-38
Identity = 105/392 (26.79%), Postives = 185/392 (47.19%), Query Frame = 0

Query:  807 DGEDAVYFY-----DPIQPNKTIPSFPTPNGITEERAILNCDKALRESESGKVCLELVPDLDIDGIIESCVEDTKILDDIEVATSSAVGVMKDACEEVTLRNITLWKTDDTTGQLQPPKAVAEILCPNECSGNGYCANATCVCDEGYLSADCSIHEDDPPVLVKVAFSGLCDIRQKDCVRTRVIGRNFINSESLACQTKALKFTTDHSIDEEFNGEATIQSSELLSFAELSCDLPDVPVDIVFSSTQKGIPVGGFDIRLSNNGENFSNESSQFVVYNSKCLQCNATTKD-CLWKEDSCRVNNYCFGKGEAHPLDWCDVC---VGENAFEPRYDNLAPVFRQTE-PIKVFKDQEMSFVIPVFDPEQKRMKYELIEPPSPPLGMEISNGGVLTW 1188
            D E+  YF+     + +Q  +  PS+PTP+G+TE   +  C + L  S  G++CL  +    +D +IE CV+D  + DD+  A  + V ++++ CE+  +     + T++    ++   +V +  CPN CSGNG C    C C   + S DCS   D  P + ++  +G CD+++ +C+  RV G+ F    S+ C+   L++ +     E   GE     +   +   + C LP             G P G + +++SN+G  FSN     V+Y+  C  C     D C  KE+ C ++  C+ +G+ +P   C +C   +    +    +N  PV +  +  ++ F  +   +    FDPE   + + L    S P G  +S+ G+  W
Sbjct:  771 DLEELTYFFPEDHAEDVQ-QEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDDLSWA-EAGVALLENECEKRIVEE-GKYNTEEYGTSIEDILSVLK--CPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNS----SEWMPGEPIYTQTVFHNSRAVDCQLPTDVQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKIT-VIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL---DSGPEGASVSSAGLFMW 1148

The following BLAST results are available for this feature:

BLAST of TCONS_00020839-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020839-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VWDE	1.401e-58	30.33	von Willebrand factor D and EGF domain-containing ...	[more]

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TCONS_00020839-protein (polypeptide) - C. hemisphaerica