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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020839 ID=TCONS_00020839|Name=TCONS_00020839|organism=Clytia hemisphaerica|type=transcript|length=5975bpRun BLAST on NCBI protein sequence of TCONS_00020839-protein >TCONS_00020839-protein ID=TCONS_00020839-protein|Name=TCONS_00020839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1212bp YSMPFYLIVLGRGGDITRYNGFDYYFSSEGKNWQNAENDCIARGGHLTSVRun BLAST on NCBI transcript from alignment at sc0000371:175888..236940+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020839 ID=TCONS_00020839|Name=TCONS_00020839|organism=Clytia hemisphaerica|type=transcript|length=61053bp|location=Sequence derived from alignment at sc0000371:175888..236940+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000371:175888..236940+ >TCONS_00020839 ID=TCONS_00020839|Name=TCONS_00020839|organism=Clytia hemisphaerica|type=CDS|length=80058bp|location=Sequence derived from alignment at sc0000371:175888..236940+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020839 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 217.238 bits (552), Expect = 1.665e-56 Identity = 175/577 (30.33%), Postives = 260/577 (45.06%), Query Frame = 1
Query: 583 CDRQIKTGWYRF---KSPAGSIMPEQCPNINSCGTTLPIWLNG------AHPTEXXXXXXXXXXXXY--PGNNCCGHTYNIDIKRCQDEVQGEDYFVYNLPATPGCPMSYCIG--NETR---CPDGERSPNGFSPGCTNEF-----PKLKGKPEVTVGSHDNRIRFTCDFEPEQIKNNAKYKVSWYTRTSDGNAELVKTETLHGNQTKSF-LQNTDGQKFCLQKNFFCEVSSVFPDSEDISDTK-RSDDFFAGIKISPTTIDLAENDAPRELKFETTVPITCEPFFP---DCAVDLEVAQTQNDG--------VLSFCKISFKKGSAGQVKT-----MEVVAKRDFIDDGDKSMKIKFHIPLTLFVPDWNCHEELPD-VTVHTKDVTTANCYSNGDPHITTFDNRRFDHYRVGDYIYTKSGARLFEVHVRTFVCAS----VSCNCGVAAREGDDVMVVDMCRDNVPRAR---FASTVEPQPGTKINRSPDGKIFEFSFPSGASVRFEARRWFGDTYYANIVVKLPSDDYKNTSGLCGIWDSSSTNDLTGKEGQQFQGRGQAPLGFTESWKLTPGSSL 2172
CD + GWYRF PA MP +C +N CGT PIWL+ P E+ T+ +CC + ++ C + + VY L T GC M YC ++ R C E G C + P G+PEV V ++R+ C F+ KN+ + ++W S +++ VK E ++F L DG L FC S F ++ + S +FFAG K+ P ++E+ L+ E+TVPI C F +C + L++ +T G LS C + + S+ T + A DF DGD+ I P+ WN +PD + + KDV TA CY+ DPHI TFD R +D+++ G ++ KS +R FEVHVR + C S VSCNCG A+EG D++ DMC + ++ F + + KI+ S G+ F SGA +R + W ++ ++ PS DY+NT GLCG +D + ND K G Q + F W++ PG S+
Sbjct: 55 CDHSLSPGWYRFLILDRPAE--MPTKCVEMNHCGTQAPIWLSLRDSETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVYLLQPTQGC-MGYCAEAISDARLHPCGSDETETGG---DCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAW----SRLSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKL-KTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLWN--NYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEW-----GMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPGKSM 606 HSP 2 Score: 140.198 bits (352), Expect = 6.138e-33 Identity = 105/392 (26.79%), Postives = 185/392 (47.19%), Query Frame = 1
Query: 2419 DGEDAVYFY-----DPIQPNKTIPSFPTPNGITEERAILNCDKALRESESGKVCLELVPDLDIDGIIESCVEDTKILDDIEVATSSAVGVMKDACEEVTLRNITLWKTDDTTGQLQPPKAVAEILCPNECSGNGYCANATCVCDEGYLSADCSIHEDDPPVLVKVAFSGLCDIRQKDCVRTRVIGRNFINSESLACQTKALKFTTDHSIDEEFNGEATIQSSELLSFAELSCDLPDVPVDIVFSSTQKGIPVGGFDIRLXXXXXXXXXXXXQFVVYNSKCLQCNATTKD-CLWKEDSCRVNNYCFGKGEAHPLDWCDVC---VGENAFEPRYDNLAPVFRQTE-PIKVFKDQEMSFVIPVFDPEQKRMKYELIEPPSPPLGMEISNGGVLTW 3564
D E+ YF+ + +Q + PS+PTP+G+TE + C + L S G++CL + +D +IE CV+D + DD+ A + V ++++ CE+ + + T++ ++ +V + CPN CSGNG C C C + S DCS D P + ++ +G CD+++ +C+ RV G+ F S+ C+ L++ + E GE + + + C LP G P G + +++SN+G FSN V+Y+ C C D C KE+ C ++ C+ +G+ +P C +C + + +N PV + + ++ F + + FDPE + + L S P G +S+ G+ W
Sbjct: 771 DLEELTYFFPEDHAEDVQ-QEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDDLSWA-EAGVALLENECEKRIVEE-GKYNTEEYGTSIEDILSVLK--CPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNS----SEWMPGEPIYTQTVFHNSRAVDCQLPTDVQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKIT-VIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL---DSGPEGASVSSAGLFMW 1148 The following BLAST results are available for this feature:
BLAST of TCONS_00020839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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