|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00020849-protein ID=TCONS_00020849-protein|Name=TCONS_00020849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1615bp
MGSIVSSKKKKTQQPQPAAISEPEKRPSASRPSNNKQINKEESPPVKQPS
KQPVPPPPIKKNQPKKSVVNTDDIEPPVSVEDISLDEWLSQNLIYEEAVK
EKAKQREVGTWIEIRLFISSTFIDTHSERDILVQRVIPSINRKLASKFIR
VIPVDLRWGVLANESNSCEAIQKTCLNQVDKCREDVLYMPWFLGLRTDRY
GWVQDKYLPDNGFEQPQLYEWFKRFESYGKNVSITSLEVMQASQSGKIKN
ESPTVFFYKRNMLDLPDKPKGTKFPEEFRWIFEFEYVEKEMEDLQLKFQY
NVNENASAYEQDRDALNKFIQDHPEIKWSEYNAQYQNAKITLKRENAKSF
GVGYVKKLEEFEKQVDEDLMDSILSNYSSVDTTQVDNYAMESIQHSNAVK
FKAATFVGRKDLVEKAFQHCITSTTSDANTLVLHGEPGCGKSGLLAKVTV
DCMSRVEETKDFLFIHAVDTCPGSSSLEGMMRRLQINLRKYRRDMGETKL
AKRFKGNASKLKQQHHKFMIESAKKYPDKLFLIIVDAVNQFNTGLGAWDM
WWLPPKEAPKNLKFMISTLNQENGTFQNACHVSPDAQRLPIENMSHEDLQ
EMVRATLERFNKKLTENEDPILGNQMEKLLSKSQSPLYLIAACEALRKFG
IFEKVTQYIESLPNTITDLFSFLLDEWSEKYGKLFVEDVAGLLCASKDGL
LENQINDLLHFKEQREKGDGEFLYDANFPRIYDSIAHFLAAGGGGYLRFF
HVQLKYTVRRKFMTELFEQETHVWMRDFFEDIVSKQCRETPQEEPPAYFE
HALEQLVYHQLKAHQNQDLPLESLKMSLRNIYFVKERIVAKQHQSLSDEY
ALALETLTNTDDIDALKQWASFVQLYTSYIREFPNFCLNMAVSQAPVSNV
TKDTLALGTEPSVKGEAYPLYWANIPEECDPMLVKYDHGGRDIAASDTQG
DIVAIAAGSKVKILDQSSGELIHILNVPGMAVWVSVDGKSLLVGDMKGKL
SWWDVSTATMEDSIEIFDEDTAIVWLECTENKILIGSGSSDFALSLWEDN
KHRSWIAVLDKKSLETVKKWCTEKTGFDYCYNERLEMIFSAHLGGEIIGW
DLQGNQLCSATAGDGVVYCVSCHPTENKIISGSNMIREWKVDKSSMEVCN
EIKDTGVSKNFTDVSSVCYDHNGKRICSTEYEILRIYSLAGERLEELRGH
KLYINKIVLVPGGNQAVTTGFDDPKVPKGQSILWELPETKEMKKDSPSKI
VDEKVLWCGFTFDGNHFLTISNDFLKLYETATLELKISKERSYYSDSDSQ
CLIHPDGKHIFSFTSEKHITCYSVNDLELVSQFEIDSGEDNDGNGADDGA
NGDTNNSEGGCNNEDGGKINEDVANNGGNGDENNRNGGDGGEETEDVDDE
EEDERSSVDLKCMTLDITGKKLMVVAGKLFTGNIIKLFDVSDLKDFKLER
EIPVELEEVQGCHLNKDADLGCISEPDRGIQVFDLSSGELKYQINRGKSI
CKFFSSNNCLLYADGNNLYKYDPESEKDVCEYKGHSNFPVDVVFLNDETQ
IMTVSRDGTLRIFDIETGENVYAYFNHRANEYTSLTAHPSGKTFLAANEN
YLLFLLKTVNNVAIN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40_4 | coord: 1525..1564
e-value: 1.6E-4
score: 31.0
coord: 1190..1235
e-value: 350.0
score: 0.9
coord: 1244..1279
e-value: 260.0
score: 1.8
coord: 1154..1188
e-value: 400.0
score: 0.6
coord: 1103..1140
e-value: 0.81
score: 17.6
coord: 1567..1607
e-value: 440.0
score: 0.3
coord: 968..1004
e-value: 79.0
score: 5.0
coord: 1286..1323
e-value: 150.0
score: 3.3 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 1532..1573
score: 10.676 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 1043..1234
e-value: 9.7E-16
score: 57.3 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 1235..1350
e-value: 1.0E-5
score: 23.9 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 736..1042
e-value: 6.5E-8
score: 31.4
coord: 1428..1613
e-value: 6.8E-22
score: 77.3 |
| IPR025139 | Domain of unknown function DUF4062 | PFAM | PF13271 | DUF4062 | coord: 115..240
e-value: 7.4E-10
score: 39.0 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 385..648
e-value: 1.7E-5
score: 24.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..74 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1336..1407 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 1532..1615
score: 10.575 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 1104..1236
coord: 944..1051 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 400..665 |
| IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily | SUPERFAMILY | 50998 | Quinoprotein alcohol dehydrogenase-like | coord: 1140..1220
coord: 1442..1608
coord: 1244..1346 |
Blast
The following BLAST results are available for this feature:
|
