TCONS_00020960-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020960-protein
Unique NameTCONS_00020960-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1845

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020960-protein ID=TCONS_00020960-protein|Name=TCONS_00020960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1845bp
LDQGSCTMKEGFVYGDKCSRHFNTPASSFDEAVSICQTWDVNATLYMPDD
MVEKEFWRKTLRSYDKVWLDIKRDVETGIWSWKDGLSRVVGSIVSGNDTF
ECAHYFPHLGYFKANPCAPIMGNGFQVLCQVSEEPTILTTTTTTTMISTT
TTATTTTESETTTTTSDATTTIPLQTTTAALLITSTTNPTTTATTLPTAT
TVEAAIATTVPAMATTTIKTTIATTNTLDEDSTTVTPTIPTEICHIQNSP
GGFFKFGTKCIKIEENTLTLNHIEGLSYCAEKYGSELLTLNSKDQFEEIL
KHVGFEDGYFLTSGSDRTQDRVVQWQDGSQGSPVDYIHGSREGNDKNCVR
INPKAKRLEWHKCYPQENRVICQVRETMSNCTAKHGFQFKNKCYRQKAEE
ISASSEAENLCTDWHSSTLFMPDNEEEISFIGDFLKGRKAWLGANDLAEE
GVVVWADGRARNFITFENNKQENDCTRFQKSGNNFFRSVKCTESQYKRAA
ICQIGSDELVSDWSDWSECPVKCVRSKMTRTRSCYDSSQHNQEQGLCGDL
LLVEEEECLVREDCQGSGYYLAEVQQSCDEFCASKDLGCSTEVETGNSAN
AFADVLLPYTIDSTRSAWQKTYSPGCLVGDVCVEFEEVPNEVKCDQIPEE
NNFRRFCHCINATDLGFSNWSPWTECTSTCNGTRLRDRVCYERCSGEEKE
MEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGND
CVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTCIPAN
YGGVPCSEIPGSSQDRQPCNTMPCEESYANLVLHIEVEFTEGMTDPNDPE
YKIFESNLQAQVTSIYEDGGDVMEGQVLNVVCHSLEPGSVVANFTINYAS
MEMEQFLFFQDVIETSQALGKLDLVAGENISLSIGPDLLSEPPSNVSAFS
PSPEVLSISWNALNQSNVDNYIIFYREKLLSNQPYSTYATENTTARLTWL
KPGTEYVYRVLAYSTAKGNGVASTLAPIWTMEKRPNVAPENITAEASGPF
NVYVTWISVPQEEMNGLALGYRIYVFTNGAYVSNETAPFDYSGWAYTSNL
EPSTSYVFEVCAFNSAGDGPCDKASARTLDSAPTAAPQNIYISSIKTHTQ
LTIHWSPPPADQIHGDLLSYKIKVFPIKSGADVYINPKVDVYDLHPSLNS
FTLKFLDSNTFYNFEIMAVNQFGEGVSDQVVGRTCLCPPVVSSNFYLLAP
YLTKDVDDQLSGVFGEILNTVVQATCGVCKTPNGPVSTKLDIIRNGRGAF
AQKSTELKILKEVDEFTDLSFPIIGNTYSDEMVGYPFVPLVGHPGVVAIV
RDKNINEIVVEMIMMILGIYPLIGLNFLMMLAAGFIVWLLEACNNTNENI
DFQTSWIRGVYEGWYWAFVTQGTHGYGDFTVTKFYSRCFAVVWALVGLVM
TSLIIGAIVTALTTVNGAAQFKIYGSEVGALNGSFEEKLGLLRNGKVNEK
RAYTTVQALREDLLAGKIEGVLLDAYTAGANAHLFTDERLRAATKLEYPR
SYGFVLSGGLKSVATEFKSYIRTEEDWILGILKNSTEPMGVSPPAELKSP
FDPESSILSTALVSMTIMILVFSIFGLIWSHYLKKLNQKNAQRLSNKDLF
NQCNEMVNDFESSMNTKILELEDKHSLQRELLIKDYYGHSAIDHHARHGD
RLQRMLNNKLQRNAIRPVLPNKEDQLDQQGDIETGEKIQFQTPREFKESQ
ELFEETPVDAFENDGGEDTTEHSDNINSIEQSDDINSIEQSDDINSLEQS
DDINSLEQSDDINSLEQSNGINSLEQSDDIISLEQSGDISAPLVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011745XLOC_011745Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020960TCONS_00020960Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR000884TSP1_rpt
IPR001304C-type_lectin-like
IPR013783Ig-like_fold
IPR013099K_chnl_dom
IPR000082SEA_dom
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1134..1225
e-value: 2.5E-7
score: 40.3
coord: 940..1020
e-value: 5.1E-7
score: 39.3
coord: 1036..1119
e-value: 9.9E-5
score: 31.7
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 942..1017
e-value: 4.3E-9
score: 36.5
coord: 1136..1225
e-value: 7.0E-11
score: 42.2
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1038..1134
score: 15.124
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 942..1033
score: 16.45
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1136..1239
score: 16.545
IPR003961Fibronectin type IIICDDcd00063FN3coord: 941..1030
e-value: 1.45551E-11
score: 62.1287
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1038..1128
e-value: 3.77236E-7
score: 49.0319
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1136..1234
e-value: 4.20033E-11
score: 60.9731
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 941..1120
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1095..1234
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 667..710
e-value: 3.4E-4
score: 30.0
coord: 772..825
e-value: 1.3E-9
score: 48.0
coord: 715..767
e-value: 4.7E-10
score: 49.4
coord: 510..565
e-value: 2.5E-4
score: 30.4
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 774..824
e-value: 3.3E-6
score: 27.1
coord: 668..709
e-value: 1.5E-5
score: 25.0
coord: 716..766
e-value: 6.6E-10
score: 39.0
coord: 511..542
e-value: 0.0012
score: 18.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 711..766
e-value: 4.7E-14
score: 51.9
coord: 768..824
e-value: 3.6E-9
score: 36.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 661..710
e-value: 2.3E-5
score: 24.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 664..710
score: 10.178
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 769..825
score: 11.093
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 507..565
score: 9.682
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 712..767
score: 12.728
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 766..824
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 663..709
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 711..761
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 508..558
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 6..130
e-value: 1.1
score: 2.6
coord: 381..503
e-value: 3.1E-10
score: 50.0
coord: 249..373
e-value: 1.7E-7
score: 40.9
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 27..114
e-value: 2.5E-4
score: 21.7
coord: 405..503
e-value: 7.4E-8
score: 33.0
coord: 275..373
e-value: 4.0E-6
score: 27.4
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 14..117
score: 9.28
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 389..493
score: 11.38
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 926..1034
e-value: 1.3E-13
score: 50.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1035..1132
e-value: 4.9E-13
score: 48.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1133..1240
e-value: 1.5E-14
score: 53.5
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 1381..1463
e-value: 5.3E-6
score: 26.2
IPR000082SEA domainGENE3D3.30.70.960coord: 830..917
e-value: 9.5E-5
score: 22.0
NoneNo IPR availableGENE3D1.10.287.70coord: 1369..1821
e-value: 8.7E-14
score: 50.7
NoneNo IPR availableGENE3D2.30.90.10coord: 509..558
e-value: 4.2E-8
score: 33.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1760..1828
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1720..1745
NoneNo IPR availableCDDcd00037CLECTcoord: 259..374
e-value: 9.29354E-6
score: 44.9182
NoneNo IPR availableCDDcd00037CLECTcoord: 21..117
e-value: 0.00130858
score: 38.3698
NoneNo IPR availableCDDcd00037CLECTcoord: 405..504
e-value: 7.82026E-10
score: 57.6297
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1364..1462
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 244..383
e-value: 1.6E-13
score: 50.4
coord: 1..145
e-value: 7.5E-10
score: 38.5
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 384..505
e-value: 1.4E-13
score: 50.7
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 384..504
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 12..129
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 235..375

Blast
[Close]
BLAST of TCONS_00020960-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 8.957e-33
Identity = 69/170 (40.59%), Postives = 86/170 (50.59%), Query Frame = 0 
Query:  666 GFSNWSPWTECTSTC-NGTRLRDRVCY--------ERCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 824
             +S W PW  C+ +C  GT+ R R+C           C G E +M+ C   +CPIHG  + W SWS C V+CGGG+ +R R C+ PVPQY G  C GS   S  C    CP    W+ WS W +C + CN G   R RTC   P + GG  C    G     Q CNT  C
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG---GPDSQIQRCNTDMC 4811

HSP 2 Score: 137.502 bits (345), Expect = 4.386e-32
Identity = 119/445 (26.74%), Postives = 175/445 (39.33%), Query Frame = 0 
Query:  511 SDWSDWSECPVKCVRSKMTRTRSCYDSSQHNQEQGLCGDLLLVEEEECLVREDCQGSGYYLA-EVQQSCDEFCASKDLGCSTEVETGNSANAFADVLLPYTIDSTRSAWQKTYSPGCLVGDVCVEFE---EVPNEVKCDQIPEENNFRRFCHCINATDLGFSNWSPWTECTSTCNG-TRLRDRVCYE--------RCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC---IPANYGGVPCSEIPGSSQDRQPCNTMPC----EESYANLVLHI-EVEF-----TEGMTDPNDPEYKIFESNLQAQVTSIYEDGGDVMEG--QVLNVV--CHSLEPGSVVANFTINYASMEMEQFLFFQ--DVIETSQALGKLD 923
            S+WS W EC   C R   TRTR+C + S  +  +   G+   VE   C +R  C   G + A +   +C E C     G  T     N+                         P    G  C   E   +V NE  C                      ++ W+ W+ C+ +C G  R R R C +        +C G + + +FC +  CP HG  S W  W  C  TC GG  RR R C++P P   G  C G       C    CPVD  W  W  WS C   C  G   R+R C   +P   GG PC   PG +     CN   C    + +  +++ +I +VEF        +TD  + + +I    ++A++T++    G  M     +LN +    + E G  V  FT+  A  + E  + F   ++++ S     LD
Sbjct: 4590 SEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNA--VEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGK---GTQTRARLCNNP------------------------PPAFGGSYCDGAETQMQVCNERNC-----------------PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPC---PGDTTQVTRCNVQACPGGPQRARGSVIGNINDVEFGIAFLNATITDSPNSDTRI----IRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHIARGLD 4979

HSP 3 Score: 120.939 bits (302), Expect = 5.312e-27
Identity = 61/170 (35.88%), Postives = 79/170 (46.47%), Query Frame = 0 
Query:  666 GFSNWSPWTECTSTC-NGTRLRDRVCYE--------RCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 824
            GFS WS W  C+ TC  G + R R+C +         C G + EM  C    CP+ G  SEW  W  C  +CG G+  R R CN+P  Q+ G  C G+  + I C +  CPV   W+ W  W +C + C  G   R R C   P  +GG  C    G+    Q CN   C
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD---GAETQMQVCNERNC 4697

HSP 4 Score: 106.686 bits (265), Expect = 1.165e-22
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 0 
Query:  711 IHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 824
            +HGG S+W +W  C VTCG G  +R R CN P+P   G  C GS  +  +C    CPVD  W+EWS+W  C + C  G+  R RTC      +GG PC    G++ +   CN  PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE---GNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
BLAST of TCONS_00020960-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN18.957e-3340.59Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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