TCONS_00020980-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020980-protein
Unique NameTCONS_00020980-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020980-protein ID=TCONS_00020980-protein|Name=TCONS_00020980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp
MANENVQTTPDFDSNMFVLKRDGRQEECHFDKITSRIKKLCFGDINMKYV
SPYAVTLKVIQGMYSGITTVELDTLAAEISASMTTKHVDYGKLAARIAIS
NLHKETKKKFSDTIHDLYTYVNPEIKKPCPMISKETYEIVQENKEKLDGA
IISGRDFEYNYFGFKTLERSYLLRINGKPAERPQHMLMRVSVGIHGKDIE
AAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMRDDSIEGIFDT
LKQCAVISKWAGGIGLHTHCIRASGSYIAGTNGHSNGLVPMLRVYNNAAR
YVDQGGNKRPGSIAVYLEPWHADILEFLDLKKNTGKEEQRARDLFFALWM
CDLFMKRVETKGTWSLMCPHECPGLSDSYGEEFEKLYEGYEKEGKFRRQI
PAQKLWYAILESQVETGTPYILYKDSCNKKSNQKNLGVIKCSNLCTEIVE
YTAPDEIAVCNLASIAVNKFVTENREEVQMPNGEIKIKKSGTFDFNKLKE
VAKTVTKNLNKVIDRNFYPCEEARNSNMRHRPIGIGIQGLADAFILMRYP
FESEEAADLNRKVFETIYYGALESSCELAERDGTYKTYPGCPVSQGILQY
DMWNVTPSNMWDWAALKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFE
PFTSNIYSRRVLSGEFQVVNKHLVKDLTELDLWNDDMKNTLVAHNGSVQN
IDEIPSEIKALYKTAWEMKMKTMINMAADRAAFIDQSQSFNIFVGVPNFA
KLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTVDQTKLKNREKNEADIM
CSIDNKEACISCSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011766XLOC_011766Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020980TCONS_00020980Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000788RNR_lg_C
IPR005144ATP-cone_dom
IPR013509RNR_lsu_N
IPR013346NrdE_NrdA
IPR008926RNR_R1-su_N
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004748ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005524 ATP binding
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000788Ribonucleotide reductase large subunit, C-terminalPRINTSPR01183RIBORDTASEM1coord: 439..450
score: 67.2
coord: 624..651
score: 56.69
coord: 309..328
score: 57.46
coord: 531..553
score: 47.83
coord: 493..516
score: 37.63
coord: 559..582
score: 41.67
IPR000788Ribonucleotide reductase large subunit, C-terminalPFAMPF02867Ribonuc_red_lgCcoord: 232..770
e-value: 2.4E-186
score: 620.2
IPR000788Ribonucleotide reductase large subunit, C-terminalPROSITEPS00089RIBORED_LARGEcoord: 613..635
IPR005144ATP-cone domainPFAMPF03477ATP-conecoord: 16..105
e-value: 1.4E-13
score: 51.1
IPR005144ATP-cone domainPROSITEPS51161ATP_CONEcoord: 16..108
score: 17.71
IPR013509Ribonucleotide reductase large subunit, N-terminalPFAMPF00317Ribonuc_red_lgNcoord: 158..228
e-value: 6.4E-23
score: 80.5
NoneNo IPR availableGENE3D3.20.70.20coord: 137..777
e-value: 6.2E-240
score: 796.8
NoneNo IPR availableCDDcd01679RNR_Icoord: 183..773
e-value: 0.0
score: 734.349
NoneNo IPR availableSUPERFAMILY51998PFL-like glycyl radical enzymescoord: 231..674
coord: 707..783
IPR013346Ribonucleotide reductase, class I , alpha subunitTIGRFAMTIGR02506TIGR02506coord: 161..774
e-value: 7.1E-218
score: 722.9
IPR008926Ribonucleotide reductase R1 subunit, N-terminalSUPERFAMILY48168R1 subunit of ribonucleotide reductase, N-terminal domaincoord: 21..230

Blast
[Close]
BLAST of TCONS_00020980-protein vs. Swiss-Prot (Human)
Match: RIR1 (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 1194.1 bits (3088), Expect = 0.000e+0
Identity = 566/807 (70.14%), Postives = 675/807 (83.64%), Query Frame = 0 
Query:   16 MFVLKRDGRQEECHFDKITSRIKKLCFGDINMKYVSPYAVTLKVIQGMYSGITTVELDTLAAEISASMTTKHVDYGKLAARIAISNLHKETKKKFSDTIHDLYTYVNPEIKKPCPMISKETYEIVQENKEKLDGAIISGRDFEYNYFGFKTLERSYLLRINGKPAERPQHMLMRVSVGIHGKDIEAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMRDDSIEGIFDTLKQCAVISKWAGGIGLHTHCIRASGSYIAGTNGHSNGLVPMLRVYNNAARYVDQGGNKRPGSIAVYLEPWHADILEFLDLKKNTGKEEQRARDLFFALWMCDLFMKRVETKGTWSLMCPHECPGLSDSYGEEFEKLYEGYEKEGKFRRQIPAQKLWYAILESQVETGTPYILYKDSCNKKSNQKNLGVIKCSNLCTEIVEYTAPDEIAVCNLASIAVNKFVTENREEVQMPNGEIKIKKSGTFDFNKLKEVAKTVTKNLNKVIDRNFYPCEEARNSNMRHRPIGIGIQGLADAFILMRYPFESEEAADLNRKVFETIYYGALESSCELAERDGTYKTYPGCPVSQGILQYDMWNVTPSNMWDWAALKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPFTSNIYSRRVLSGEFQVVNKHLVKDLTELDLWNDDMKNTLVAHNGSVQNIDEIPSEIKALYKTAWEMKMKTMINMAADRAAFIDQSQSFNIFVGVPNFAKLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTVDQTKL----------KNREKNEADIMCSIDNKEACISC 812
            M V+KRDGRQE   FDKITSRI+KLC+G +NM +V P  +T+KVIQG+YSG+TTVELDTLAAE +A++TTKH DY  LAARIA+SNLHKETKK FSD + DLY Y+NP   K  PM++K T +IV  NK++L+ AII  RDF YNYFGFKTLERSYLL+INGK AERPQHMLMRVSVGIH +DI+AAIETYNL+SE+WFTHASPTLFN+GT RPQ+SSCFLL+M+DDSIEGI+DTLKQCA+ISK AGGIG+   CIRA+GSYIAGTNG+SNGLVPMLRVYNN ARYVDQGGNKRPG+ A+YLEPWH DI EFLDLKKNTGKEEQRARDLFFALW+ DLFMKRVET   WSLMCP+ECPGL + +GEEFEKLY  YEK+G+ R+ + AQ+LWYAI+ESQ ETGTPY+LYKDSCN+KSNQ+NLG IKCSNLCTEIVEYT+ DE+AVCNLAS+A+N +VT                   T+DF KL EV K V +NLNK+ID N+YP  EA  SN RHRPIGIG+QGLADAFILMRYPFES EA  LN+++FETIYYGALE+SC+LA+  G Y+TY G PVS+GILQYDMWNVTP+++WDW  LKEKIAK+GIRNSLL+APMPTASTAQILGNNES EP+TSNIY+RRVLSGEFQ+VN HL+KDLTE  LW+++MKN ++A NGS+Q+I EIP ++K LYKT WE+  KT++ MAA+R AFIDQSQS NI +  PN+ KLT++HFYGWK+GLKTGMYYLRT+PAAN IQFT+++ KL          + +E+N A ++CS++N++ C+ C
Sbjct:    1 MHVIKRDGRQERVMFDKITSRIQKLCYG-LNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH----------------TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790
The following BLAST results are available for this feature:
BLAST of TCONS_00020980-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIR10.000e+070.14Ribonucleoside-diphosphate reductase large subunit... [more]
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