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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020980 ID=TCONS_00020980|Name=TCONS_00020980|organism=Clytia hemisphaerica|type=transcript|length=2906bpRun BLAST on NCBI protein sequence of TCONS_00020980-protein >TCONS_00020980-protein ID=TCONS_00020980-protein|Name=TCONS_00020980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MANENVQTTPDFDSNMFVLKRDGRQEECHFDKITSRIKKLCFGDINMKYVRun BLAST on NCBI transcript from alignment at sc0000376:70617..78803+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020980 ID=TCONS_00020980|Name=TCONS_00020980|organism=Clytia hemisphaerica|type=transcript|length=8187bp|location=Sequence derived from alignment at sc0000376:70617..78803+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000376:70617..78803+ >TCONS_00020980 ID=TCONS_00020980|Name=TCONS_00020980|organism=Clytia hemisphaerica|type=CDS|length=34230bp|location=Sequence derived from alignment at sc0000376:70617..78803+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020980 vs. Swiss-Prot (Human)
Match: RIR1 (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1) HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0 Identity = 566/807 (70.14%), Postives = 675/807 (83.64%), Query Frame = 1
Query: 142 MFVLKRDGRQEECHFDKITSRIKKLCFGDINMKYVSPYAVTLKVIQGMYSGITTVELDTLAAEISASMTTKHVDYGKLAARIAISNLHKETKKKFSDTIHDLYTYVNPEIKKPCPMISKETYEIVQENKEKLDGAIISGRDFEYNYFGFKTLERSYLLRINGKPAERPQHMLMRVSVGIHGKDIEAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMRDDSIEGIFDTLKQCAVISKWAGGIGLHTHCIRASGSYIAGTNGHSNGLVPMLRVYNNAARYVDQGGNKRPGSIAVYLEPWHADILEFLDLKKNTGKEEQRARDLFFALWMCDLFMKRVETKGTWSLMCPHECPGLSDSXXXXXXXXXXXXXXXXXXRRQIPAQKLWYAILESQVETGTPYILYKDSCNKKSNQKNLGVIKCSNLCTEIVEYTAPDEIAVCNLASIAVNKFVTENREEVQMPNGEIKIKKSGTFDFNKLKEVAKTVTKNLNKVIDRNFYPCEEARNSNMRHRPIGIGIQGLADAFILMRYPFESEEAADLNRKVFETIYYGALESSCELAERDGTYKTYPGCPVSQGILQYDMWNVTPSNMWDWAALKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPFTSNIYSRRVLSGEFQVVNKHLVKDLTELDLWNDDMKNTLVAHNGSVQNIDEIPSEIKALYKTAWEMKMKTMINMAADRAAFIDQSQSFNIFVGVPNFAKLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTVDQTKL----------KNREKNEADIMCSIDNKEACISC 2532
M V+KRDGRQE FDKITSRI+KLC+G +NM +V P +T+KVIQG+YSG+TTVELDTLAAE +A++TTKH DY LAARIA+SNLHKETKK FSD + DLY Y+NP K PM++K T +IV NK++L+ AII RDF YNYFGFKTLERSYLL+INGK AERPQHMLMRVSVGIH +DI+AAIETYNL+SE+WFTHASPTLFN+GT RPQ+SSCFLL+M+DDSIEGI+DTLKQCA+ISK AGGIG+ CIRA+GSYIAGTNG+SNGLVPMLRVYNN ARYVDQGGNKRPG+ A+YLEPWH DI EFLDLKKNTGKEEQRARDLFFALW+ DLFMKRVET WSLMCP+ECPGL + +GEEFEKLY YEK+G+ R+ + AQ+LWYAI+ESQ ETGTPY+LYKDSCN+KSNQ+NLG IKCSNLCTEIVEYT+ DE+AVCNLAS+A+N +VT T+DF KL EV K V +NLNK+ID N+YP EA SN RHRPIGIG+QGLADAFILMRYPFES EA LN+++FETIYYGALE+SC+LA+ G Y+TY G PVS+GILQYDMWNVTP+++WDW LKEKIAK+GIRNSLL+APMPTASTAQILGNNES EP+TSNIY+RRVLSGEFQ+VN HL+KDLTE LW+++MKN ++A NGS+Q+I EIP ++K LYKT WE+ KT++ MAA+R AFIDQSQS NI + PN+ KLT++HFYGWK+GLKTGMYYLRT+PAAN IQFT+++ KL + +E+N A ++CS++N++ C+ C
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYG-LNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH----------------TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 The following BLAST results are available for this feature:
BLAST of TCONS_00020980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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