XLOC_011766 (gene) - C. hemisphaerica

Overview
NameXLOC_011766
Unique NameXLOC_011766
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000376:70387..78803+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011766 ID=XLOC_011766|Name=XLOC_011766|organism=Clytia hemisphaerica|type=gene|length=8417bp|location=Sequence derived from alignment at sc0000376:70387..78803+ (Clytia hemisphaerica)
AGTCGAGTAATTTCAGCTCTGGCCTCGTTTCAGAAATCATTACGTAATGA CAGCTGTAGCTTTATTTTGGCGCGCTAAATTTTTCTTATGTTTTCTCCAC CACAAGGTCTATTATGTAACTTATCCCACTTTTACAATGAAAACCTTTGA ATCAATTAGTACCAACGGTGGAGGTAGTACTTAGTACCCTCaacgaaata aaaacaaaccaaaacgcGCCAAAATTCATTCTTTGATGGTTGACGCGGGA AAGACACACTTATCACAAAGCGTACCTTCATTTCCACCAAATTCTACTGT TTTTTACCTTTATCAAATCTGTTATCATGGCCAACGAAAATGTACAAACA ACTCCTGATTTTGATTCAAACATGTTCGTTTTGAAAAGAGGTAAGATATc agtttctttatttcttttctttgtcagtcagggaaatccgcCCTCAATCA TCGCGGCAGTAATTtcttactgcaattgcggtataaacgtcacaattttt catgtaccgcaattgcagtatacccaagaaacagaattcaagattcaatg agaaaacaggcaatttttgtacataattgatcgtctttttaacgcacaga caaagtattttttccgtagatcagattcttttaataaagaaaagctaTCT TCTCGTACAATTttttacagtcgatgtttgtttatctttgccgaccagca ctatatgtagcTGTTATAAGCCTTTGTGGGCAATCACGATTGAAAACTAC CGCAAATGCAGTATACTGCAATTGAGGGATTCAATCAAGAAACTTTTGAT TTGAACTCCTAACAAATACAGGTATATGATAGGATATCCATATGCAGGGT TTCCTGAAAAGTctcaatttttctaattttataggaggaatttgagaaaa atgtaCTGATTTTGATCACTTTTTTGTCCTAATGTTTTGTAGAACTTTCT TTGTTGAAATGTTCTCTAGATTCCATCATCAAAAAAGcttgaaacaatat ttttaacatcttgagaattttacattttctcggTTGCTGGTCTCAATGTT GTCAAATTTTTGTGGAAACCCATCAAAATACTGTCATTAGATCATCTTTT ATAAGGCGGGTCTTTCAAGACTATTGTAccttaaaaaatgaaatcagcAG GATTTATGTTGTGTTTTTACAATGCTTCCTAATAATTGTTCGTTGTGTTC GCGTCATTTCCAGCCCCAAAATGTGAGTGGCTTGCTCGGCATCTTAAATC ATCAGAAAAATGCGTCCAAATATAGGCTTGTTCaatcagtgtagacctaa ctcttcacacaaaatttacgcgaaacgcatgtttggacttaagccaaagt cccgcaaagacgggacaaaaatcagttttttaaagtttgcgaaaaaacgc cacatagaagatctttcaaattcattatgtgaatagagcagtaaaaaata caactattttgtttttccttttttttgcaaaagttctaggaatgaaaata aagagataatgataattgaatactatcaattgatgacccgcggcacaCGT AAAACTAGAATCGCTTcacgtactcttcgcttgagaaaatgattgacaga ttgaagctTTTCACCTGCGCAtgagttcgcggagcgttctcggctcaatc attggaccgcgctaaaaatggtagactgagtaTATCCCTGACTACCAATT GGGCCATTTTCAAACCATGCAGGAATATTGagaaacttttccagggggtc tgagccttgattttccaaggggattattaaaggtttccaggggTGTCAAC CCCCAATTTCCATGAGATagtttgttatccaaaatttcAAGGGGGTTAGT GAAAAATTTGTTGATGCCCCCTGtacaatctttttttgaatagCCCAATT AGTTGGTCAAAAGAGCCCTGAATGTGTACCATAGTCTGTTACAGCTTCAc taaaagttttagaaaaataacaGGAAACAGTTGTGGTGGGGATTTTGAAA AACAGACCAGAATGCTGAAAATAACTATTCTTAAAGCCAACCTTGATCAC AAACAGAACTTTAAAATGTTGTGAAATAACTTTTATATGAAAATGTGCCC GGAGTGGATTTAGAAAAGACGTTGAGCTAAAAGTTTTGTTTGGATATAAT TTCCCTAATGCCCTTTTTATTTTACCCAGTACCATATTATAGAGACTGAT GATTTTTGTTGCATATGATTTACAGATGGACGTCAGGAGGAAtgtcattt tgacaaaatcacaTCAAGAATCAAAAAGCTCTGTTTTGGAGATATCAATA TGAAGTATGTTTCTCCTGTAAGTAAAAAGCTTATTTAGACTGTCCTCTGG TGGATTTttagttttatgttttaaaaactttatttttaaagaTTCAGTAG ATTTTTgcttttcccaaattttcctcAGTAATTCTAATTTGGCATTGGCA TTCCGCGTTTGCCAACATAGAAGTGCCAAtgcaaaaaaatctgtataagA AAGGCTGTCTCCTGTGTTCACCGTAAATCACTATTGATTCCTTGGTATTT TCTTCTAGTATGCTGTTACATTGAAAGTTATTCAAGGGATGTATTCCGGG ATCACAACAGTTGAACTTGACACTTTGGCTGCCGAAATATCTGCCTCCAT GACAACTAAGCATGTGGATTATGGAAAACTTGCAGCCAGAATTGCTATCT CAAATCTTCACAAAGAAACAAAGAAGAAGTTCAGTGACACTATCCATGAC CTTTACACTTATGTGAATCCGGAAATCAAGAAACCTTGTCCCATGATTTC TAAAGAAACTTATGAAATTGTTCAAGAAAATAAAGAGGTAACTTTATCAA GCActtgttttgagaaaatgtGTTAATTTTTCTTCTGGTTTTCTTAAATC ATATAGCCCTTGCAAAAATCTTTTAATCCACACCCACAGTCTTCATTCAA CCCATAAATAGATGTAGTAGGTATGTTTTTGAGAACATTGTCTTTTGCAA ATCCCACAAGTTGCTCTGCTCTTACTCTTAGAAATTGGATGGTGCCATCA TTTCAGGCAGAGATTTTGAATATAATTACTTTGGATTCAAGGTGAGTTTG TTTCAGATCAACTTCAACTTgtaccttaaccctattcaacctaggctttt aggggcggttcagaactaggggggggggggNcttttcccaaattttcctc AGTAATTCTAATTTGGCATTGGCATTCCGCGTTTGCCAACATAGAAGTGC CAAtgcaaaaaaatctgtataagAAAGGCTGTCTCCTGTGTTCACCGTAA ATCACTATTGATTCCTTGGTATTTTCTTCTAGTATGCTGTTACATTGAAA GTTATTCAAGGGATGTATTCCGGGATCACAACAGTTGAACTTGACACTTT GGCTGCCGAAATATCTGCCTCCATGACAACTAAGCATGTGGATTATGGAA AACTTGCAGCCAGAATTGCTATTTCAAATCTTCACAAAGAAACAAAGAAG AAGTTCAGTGACACTATCCATGACCTTTACACTTATGTGAATCCGGAAAT CAAGAAACCTTGTCCCATGATTTCTAAAGAAACTTATGAAATTGTTCAAG AAAATAAAGAGGTAACTTTATCAAGCActtgttttgagaaaatgtGTTAA TTTTTCTTCTGGTTTTCTTAAATCATATAGCCCTTGCAAAAATCTTTTAA TCCACACCACAGTCTTCGTTCAACCCATAAATAGATGTAGTAGGTATGTT TTTGAGAACATTGTCTTTTGCAAATCCCACAAGTTGCTCTGCTCTTACTC TTAGAAATTGGATGGTGCCATCATTTCAGGCAGAGATTTTGAATACAATT ACTTTGGATTCAAGGTAAGTTTGTTTCAGATCAACTTCAActtgtacctt aagggaacttatatTGGTGagatttgaccattttttgaatttgggCTGAT TTGGGCTAAAATTGATATTCGCCATAATTTATACTAAAGGGCATCTTATG CatctaccatttgcttacacagtaGTTTTAAACAAgacaaaaaacaactt tctccCTCTTATGCCAAACAGGCATGAGAAGAATGCCTCCTTTTATATCA TAACGTACACTTTATTAGATTTGCATTATGGGTCGAGtttgtttgaattt ctttttagaccCTCGAAAGATCGTACCTTTTAAGGATCAATGGAAAGCCT GCAGAGCGTCCACAGCATATGTTAATGAGAGTATCAGTTGGTATTCATGG TAAAGATATTGAGGCTGCTATTGAAACGTACAATCTGATGTCTGAAAAAT GGTTCACACACGCCTCTCCTACTCTTTTCAATTCTGGTACCCCAAGACCT CAGATGTCAAGTTGTTTTTTGTTAGCAATGAGAGATGATAGCATTGAAGG CATCTTTGACACTCTAAAACAGTGTGCTGTAATTTCAAAGTGGGCTGGTG GTATTGGTCTTCACACACATTGTATAAGAGCTTCTGGAAGCTACATAGCT GGGGTAAGCTTCAATGATATATTTGAGTGATTATTAAAGTAAAATCTTTC CTAGTAGATTTCTTtgcaaaaatagaaataagttGCAAAAAACAGATGTT GAAACAAGGTTCAAAATCCAAAGTCTCAAAGAAATTCCAAGTGTTTTGAC CCTCTGTTATATTATCTTATATTTGTATATATTGTAAAGGtattttaaag tcattttattcttttaaaaatatgaacaaaatttttgtttgatttagaCA AATGGACACTCAAATGGTTTGGTTCCAATGTTGCGTGTTTACAACAATGC TGCTCGTTATGTTGATCAAGGTGGAAACAAGAGACCTGGATCTATCGCTG TTTATTTGGAGCCATGGCATGCTGATATTCTGGAATTCTtagatttgaag aaaaacactggaaaagaGGAACAGGTAACCTACAGTTTATTCACAGGATC CTGTGAAAGTTGAACCACTTAACAAAAGTGAGATTCTTTGGATCAAAATT CTATAATACTTTGTATTTTGCTTTTTAGAGAGCCCGTGATTTGTTCTTTG CACTCTGGATGTGTGACTTATTCATGAAAAGAGTTGAAACTAAAGGAACT TGGTCCTTGATGTGTCCACATGAATGTCCAGGTCTCTCAGACTCCTATGG tgaagaatttgaaaagttatatgAAGGTTATGAAAAAGAAGGTAAATTCA GAAGGCAAATTCCAGCTCAAAAACTTTGGTATGCAATCTTGGAGTCTCAA GTCGAAACTGGCACACCTTACATATTATACAAAGATTCTTGTAATAAGAA AAGTAACCAAAAGGTATGTAGTTTTGACTCTTTCATAATTATCATTTGCA AAGTAGTTCAAATTTTGTTTACCAAATGTTATTCTTTACTTAGATTTCTG CTAACTTGTATTCAAAGTTATTTCAGCTTTGATTAAACTTAAAGAGATac acactcttttttataagaatacttgTTTTTGGCTGAGGGCGagctattct tatttttcaattgaTCTAAACAATACGCCTATTGTTTTAACTCTGAAATC TCaacctgatattcttataaaaatttaaaaaagtgtgtataaACTGTTGT AACATTCTTAGAAAATAAAGTATATCTTATATAAAGTATATATAATTTAC CTTGGCTAGCTATTAAAAATTTGATTGCTCAATAAACAATTGACTGATTT TTTATTACCCAACATGCCCAGTCAAActtatatttttctattctaGAACC TTGGTGTCATTAAATGTAGTAATCTTTGCACTGAGATTGTTGAATACACC GCTCCTGATGAGGTAATCCTAATTTCCTTAAACTGTTATCAAACGATAAT GAACCAAACTAAGGAAAATTCTACTGCTCGTGGCAATGAACTCaaaaata caaacttaaatTTCCGGACTAAAGACAAATgcaaaaaaggttttaaaatg ACGTTTGGTGAGGACTGAGAgtttttttttatctggttatccctttgaGC TGTGTccataaacatttttttgtaacCTCTGGTGAGACCAAGACCCATAA TTCAATCAATATCTGTTATCCTTTAGATTGCTGTTTGCAATTTGGCATCT ATTGCTGTCAACAAATTTGTCACTGAAAATAGAGAAGAAGTTCAAATGCC AAATGGagaaattaaaataaagaaGAGTGGAACTTTTGACTTCAACAAAT TGAAAGAAGTTGCCAAAACCGTCACTAAAAATCTGAACAAAGTTATTGAC AGGAATTTCTACCCTTGTGAAGAAGCTCGCAACTCCAACATGAGACACAG ACCCATTGGTATTGGAATCCAGGTAATGTTTTATTTGTATCATAATTAGC CGCTTTAGATTCAACTGGCAAATGATGACTTTGTGCCCTGAATTGGAAAT CTGTGCCTTCTAAACAAACTTGAATGAGGATTTTTACTGTTCTTTATCTT ATCTGTTACATTAAGATACTTGTATCAGTTGTAAAGGggaacaaaaatca taaattgaCATTCTGGCTGATTACGACATCTTGTGTCTATAACTACATGG TGTTTTCTTGAAATGTCAAACATTTTTGGCTCGTCTTCAAATCCAAGTTC AGGTGTTTAGTCGAGGCTTCCTTTAATGCTGCATTCTTTAGTAATCTGAT GcctattttagaaaatcaacTGATAGTCTTGGTccctataaaaatgaaaa atttaaagctTATAATTTTTCCTTAGGGTCTTGCTGATGCGTTCATTCTC ATGAGATATCCTTTCGAATCAGAAGAAGCCGCAGATCTGAACAGAAAAGT CTTTGAAACAATATATTACGGTGCATTGGAATCCTCATGTGAATTGGCTG AGCGTGACGGCACTTATAAAACTTATCCTGGTTGTCCAGTTAGCCAAGGA ATTTTGCAATACGACATGTGGAATGTTACCCCTTCCAATATGTGGGATTG GGCAGCACTCAAAGAAAAGATTGCTAAGTAAGTCTTTTTCAAAGTTCCAC TTCCAGTAGACCTATTCATTTAACCATTTacaatgttttcaaaattttcc atcctTAATCCGTGAAAGTTTGTAGACGAATTCTTATTCTCATGTCTTTT ACTTTTTAGACACGGCATCAGAAACAGTCTTCTGTTAGCTCCAATGCCTA CAGCATCAACAGCTCAAATTCTTGGCAATAACGAATCGTTTGAaccattc accagtaacatctaTTCAAGACGTGTTTTATCTGGCGAATTTCAAGTGGT CAATAAACATTTGGTTAAAGATCTTACTGAATTAGATTTGTGGAATGATG ATATGAAAAACACCTTGGTAGCTCATAACGGATCTGTACAGGTAAAAATA GTTTTAGCAAATAATGCTCATTGATATCCAAAATTTCGTTTTCAACGAAA AGACTTTTAGAAAAATACTCCGCTTATAACTTCAAACCACATCAGACGAG CATTAagaaaatttgttaatttttttaatctttcatTTAGAATATTGACG AAATTCCGAGCGAGATCAAAGCATTGTACAAGACAGCCTgggaaatgaag atgaagacaATGATCAACATGGCTGCTGATCGAGCTGCTTTCATTGACCA ATCTCAGTCATTCAATATCTTTGTTGGAGTACCAAACTTTGCTAAATTGA CCGCCATTCACTTTTACGGATGGAAAAAGGTAATTTTAACATTAAATTTT CTTTGCAATCACACATAGCTCTTGCACTAAGTGAGGTATTTTAAATTGGT ATTAATTATGATGATTCTTTGTTTGTCTTTTTATTTGCTTGCTACACTAT TTCGTCAAAAATTTATGCGTAATTGCGGGTCTACTGCTTTGGTGTTTTTT ACTTTGTGTAGTCAAAACTATTGTATTTACCTTTATTTTCCAGGGATTGA AGACTGGTATGTACTACTTGCGAACGAAGCCAGCTGCAAACGCTATTCAA TTCACTGTTGACCAAACCAAACTGAAAAATCGCGAAAAGAACGAAGCTGA CATTATGTGCTCTATCGATAACAAAGAAGCCTGCATTTCTTGCTCAGGTT AACAAGTGAGACTTTAGATATTGTTTAAGTGTGGTATCTATTGAATCTGC GCCGTAGATGTGAATACTGTGTGTGCAGTTACCCTCCGGGAAGGGAAATT TCAAAGGACTCAATAAAAAGATGTGtatatatttctaaaatttgtataaa aataatctACTTATATTTAGTATTCGGTTacgtttaacttttatttactt AGCATAACATGTAAAGAAATaacaaaagacaaaaaattttaaatttgcaa aatattttgttttgcaaATTCATTTTCTAGataattttgatcatttttat tAATGAACTTGTAAAACTATATAAACCTTCAtagaaaaactacaaaaata taATACAGATCAAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00020977TCONS_00020977Clytia hemisphaericatranscript
TCONS_00020978TCONS_00020978Clytia hemisphaericatranscript
TCONS_00020979TCONS_00020979Clytia hemisphaericatranscript
TCONS_00020980TCONS_00020980Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00020980-proteinTCONS_00020980-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:70387..78803 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RRM1ribonucleoside-diphosphate reductase large subunit Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
524.31 462.76 1017.95 1111.18 95.45 79.31 52.22 57.69 88.06 105.72 96.99 74.96 42.06 33.94 40.6 60.26 111.8 110.78 10.77 17.4 57.16 60.49 163.53 147.59 77.48 84.59 41.41 27.84 85.27 83.9