TCONS_00020992-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020992-protein
Unique NameTCONS_00020992-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020992-protein ID=TCONS_00020992-protein|Name=TCONS_00020992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MAKIWRKAVDFLNSSDSRVRVETQQIAGEDFEVWRWIGVCIPKPSKKQKK
ESLSSPRHLQQLQSCKSWQGRAFDEINDVVKMPIVPPTPCLKIRYLHEGP
EEKEAGWEEQVQNAVLEKCQEAGGDILHVFVDKTSKEGCVYVKCLNIESA
GKSFRAMYGNWFDGRLVIVKFVTLARYHQRFPEALAHTAPLRPSNTIDSS
MNWNLSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011774XLOC_011774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020992TCONS_00020992Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.330coord: 84..190
e-value: 2.5E-7
score: 30.1
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 115..174

Blast
[Close]
BLAST of TCONS_00020992-protein vs. Swiss-Prot (Human)
Match: MAN1 (Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.965e-52
Identity = 98/202 (48.51%), Postives = 128/202 (63.37%), Query Frame = 0 
Query:    1 MAKIWRKAVDFLNSSDSRVRVETQQIAGEDFEVWRWIGVCIPKPSKKQKKESLSSPRHLQQLQSCKSWQGRAFDEINDVVKMPIVPPTPCLKIRYLHEGPEEKEAGWEEQVQNAVLEKCQEAGGDILHVFVDKTSKEGCVYVKCLNIESAGKSFRAMYGNWFDGRLVIVKFVTLARYHQRFPEALAHTAPLRPSNTIDSSMN 202
            M K+W +AVDFL +++SRVR ET++I G DF VWRWI     +PS    K  L  P         K WQG+AF    D    P    TPCLKIR + +   E    W   +Q A+LEKC +  G I+H+ VDK S+EGCVYVKCL+ E AGK+F+A++G+WFDG+LV VK++ L RYH RFP+AL    PL+PSN   +SM+
Sbjct:  712 MKKVWDRAVDFLAANESRVRTETRRIGGADFLVWRWI-----QPSASCDK-ILVIP--------SKVWQGQAFHL--DRRNSPPNSLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDG-IVHIAVDKNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSMS 896
The following BLAST results are available for this feature:
BLAST of TCONS_00020992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAN12.965e-5248.51Inner nuclear membrane protein Man1 OS=Homo sapien... [more]
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