TCONS_00020992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020992
Unique NameTCONS_00020992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020992 ID=TCONS_00020992|Name=TCONS_00020992|organism=Clytia hemisphaerica|type=transcript|length=1272bp
TAGAAACCGAATGTGAACTGGACGaaagaaaatggcaaaaatttggcGAA
AAGCAGTCGACTTTTTGAACTCGTCCGATTCGCGTGTTCGCGTGGAAACA
CAACAAATCGCAGGTGAAGATTTCGAGGTTTGGAGATGGATTGGTGTGTG
CATTCCAAAGCCCagtaaaaagcaaaagaaagaaagccTCTCAAGTCCAC
GACATcttcAACAATTACAATCCTGTAAAAGCTGGCAAGGGCGAGcGTTT
GACGAGATAAATGATGTTGTAAAAATGCCGATTGTTCCCCCTACACCTTG
TTTGAAAATTAGATACCTCCATGAAGGACCAGAAGAAAAGGAAGCAGGTT
GGGAAGAACAAGTACAGAATGCGGTGCTGGAGAAATGTCAAGAAGCTGGT
GGTGATATCCTTCACGTCTTCGTTGATAAAACTTCTAAAGAGGGTTGTGT
CTACGTCAAGTGTTTGAATATTGAGTCAGCTGGCAAATCGTTTCGTGCCA
TGTACGGCAATTGGTTTGATGGTCGATTAGTAATCGTGAAATTTGTCACA
TTGGCTCGCTATCACCAACGTTTTCCTGAAGCTCTCGCCCATACCGCCCC
CTTACGCCCTTCAAATACCATCGATTCTTCAATGAACTGGAATCTCTCAT
CCTGAACATAAGGGTGGTGGGTGGTTGTTTTTACAAAGTTCCTATCAATA
CTAACCGTTGTTATTCGAAGAGAAATGTCTCAAATGGTTGGGATTTAATT
CGTGCGTATGTGGCCAAGACGATCAAGTCTAAGCGAATGGGTTCCATGAA
TTTTTCGTGGTACGACGCTCTTTAAAGAAATAACAGGATTCGTTGGGTCA
AAACGGGAACATCGATTTTCGATCGAGATTTAATGGAATTTGAGCCCTAA
CAGATTTTGTACGTCAAAAACATTTCGTACGTGTTGTATTTTCCAGAACA
ATATGTTCATTAATCTACAGAACAAACATTTTTAAGTTGAAAACATTCAC
CgaatttgttacaatttttttcaagagctgaaaattattattataagtAT
TATGATAAACAGTTAATAATTTTTGTCTTGGTATATGTACTCCATTTAGA
TAACTtccttgtaaatattttttaaactttctttttgagatttcttcctC
AAATGATTTGGTACTGGCAATACTCTTAAGGTCTGGGGCCACTTGAAACG
TTTTTCATCAAACAGaacatttgaaaactgaaacacGCAAGAAGTttcac
tttgataaaaaaaatgacGGAA
Run BLAST on NCBI

protein sequence of TCONS_00020992-protein

>TCONS_00020992-protein ID=TCONS_00020992-protein|Name=TCONS_00020992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MAKIWRKAVDFLNSSDSRVRVETQQIAGEDFEVWRWIGVCIPKPSKKQKK
ESLSSPRHLQQLQSCKSWQGRAFDEINDVVKMPIVPPTPCLKIRYLHEGP
EEKEAGWEEQVQNAVLEKCQEAGGDILHVFVDKTSKEGCVYVKCLNIESA
GKSFRAMYGNWFDGRLVIVKFVTLARYHQRFPEALAHTAPLRPSNTIDSS
MNWNLSS
Run BLAST on NCBI

transcript from alignment at sc0000376:275692..286000+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020992 ID=TCONS_00020992|Name=TCONS_00020992|organism=Clytia hemisphaerica|type=transcript|length=10309bp|location=Sequence derived from alignment at sc0000376:275692..286000+ (Clytia hemisphaerica)
TAGAAACCGAATGTGAACTGGACGGTAATATTTATATGAAATCATCCACA
CTTGTTCCCTGTTCGAATTTCGAAGCGTATTTTTTAGCTTGAAAACCTTT
TTGCAGCTTAGAAACCTGGCTTTGAAAAACAGTATGCTTTGGATGAATTT
TTTCGAacttgttttgttgtttttggttttttagAGTGTTTAGCCAGGTA
GATGAAAAATGCTGCAGTCTGCTTAGTTCGTATTAGTGAATAAAATCTCA
CTAaagcccgggggtactaggtttgcgaggtgacgggtatgtccgagcca
aaaatcgaaaatcgactcTTACGAaaaaattggcgtttttggggccctta
gagagacttttatcaaaatgagaaagagaaaaaaataacgtttttgtcga
ttttcacccgatttttgtcgaaatttttgaaaatcacgacCGTTTGAGgg
aggaaatttcgattttcgtgaattttggacccttacagagactcaatttg
ctttttaatggtttttgtacccatTTAAAAGACTTTTGAGGGtaggaaaa
agggacccttatggctcgcacatacccggtacccattttgcctaagtacc
cccccccctgcacTAAAGTAAACTGTACACCAGCGTTTGCTCTTGGGGAA
CCTCCTGTGCATTCGGCTCTTTCCattgaataattttttctgCTTGTTTT
CATCAAATAAACTTCCATCTCTTTCCCTGATTCTTCAGTATTTAACCTCC
TTTTCACATAGTCTATTAGGTATCCGAGTATGGAGAGTTCGTATCTTTTC
TTCTTACTTTGTCCTGAGAATGAAATCTGGAGGAAAAATATACTATTCAT
GACttatttatttttaactttatagaaagaaaatggcaaaaatttggcGA
AAAGCAGTCGACTTTTTGAACTCGTCCGATTCGCGTGTTCGCGTGGAAAC
ACAACAAATCGCAGGTGAAGATTTCGAGGTTTGGAGATGGATTGGTGTGT
GCATTCCAAAGCCCagtaaaaagcaaaagaaagaaagccTCTCAAGTCCA
CGACATGTAAGATATCTTTCTCTTTAAAACTTAAAACCCCTGCAAAGTCC
TCCGCTTTGGTTAGACGAGGATAGctcaaaatgaaatgaaaaattctcGT
ATATGCCTCACTTCCAAAGGCAGTAGCGATCTGTTTTCgagttaattttt
ctttcgttttttgtatgtttttaagACTTCTTTAGATTTTTACTTCTATC
TTCCCACACGCAGATTTTTATGGTATTATAATACTTCGCTTTCGAAACTA
GACGACCTCCTTGTGAAGACTTTCGAAACgacattgctatttttattCCA
GGAAAAGTTTGTGGTTTTAATTTTCGTACCGGAGGAACTTTTTTGAAACC
AGACAGTCGTATTTGACAATATATGTCGAAATGGCAAGAACTGTCATCAC
GGAAAATATTTCCAGTACAGGAAGATGGAGCACCAAAAAGGAGTTCAAGA
TTTTGCTTATGTACTATACGTTCTGTNCACCAAAAAGGAAATAACAGTTC
ACGATTTTGCTTATGTACTATACGTTCtggtttttttttgtattatattt
ttctgactttcaatttttcagcttcAACAATTACAATCCTGTAAAAGCTG
GCAAGGGCGAGGTTAGTTTACTTAATTAAACATTTCCttatataatataa
ttttaatcATTCACTATCAAGTTCTGCTACCAAAATTggctcaaaatttt
atttcttaagATGAATGGAACCTAGTCCAgtcgttttttttgtttttttt
taatagagCCCATAAAAGCTTAGCAAGTTTCTCACACGGTTTTTATTGAT
TGCTTTGAGATAAAATTTCgtttggatttaattttgcagattttaagTCC
AAAGGGAAATTTAAAAaggctcatccgcgaaaataattCCCcgcgaaata
tttgaaaatccaTACTTGCTCTTTTCagcatgaaaaattaaaaactttaa
aaactgTGAAAATTATCGCCATTGCTATATATCCCGTCAAAGTACTCCAA
CGTCTACCTACTTCCAAAACAACtgaaactctttttttttttactttcag
cGTTTGACGAGATAAATGATGTTGTAAAAATGCCGATTGTTCCCCCTACA
CCTTGTTTGAAAATTAGATACCTCCATGAAGGACCAGAGTAAGTTATTCC
ATTCCATCGGAGTTTATCAGTGTTATTTTGTGGTTGTTATTTACAGTTAA
CGCTCTCTAACttgacgctctactattcgatactccatcaacaagaaacc
ctcataaacgacgctctactattcgacgcgctcccttattcgattcCCCT
TGTAAAataaattagagagcgtcaactttaCTTTTATAATAAACATGTAC
TGTGGTaataataaatttacaatttcgtcgttctactattcgatacgctc
ccgttattcgatgaaaatccaattcccctttgaaaatcgaattagagagc
gttaaCTGGTAATTTGTGATGTTGTATGAAACTGGTTCGTTTCTACGCGT
ATGGGATATTAGGTGAGAAATATCTTCTTCTTTTCGAGGACTTTCTATTT
ATATTTCTAGTCAGTGTTTAAGGGTTAGAAGGGCAAAATAGTTTTCCTTT
TTATTGATGTCAGATTGAATACTTATCTTTTCACCATTCATTACGGGAGA
GTGAAAGTGTTCTGAATCTAAGGTTgatattgaatttgaaattatcCCTA
ATTGGCTAaagtgaaatttaattttttatcaattaagATGATCTCTttgg
ttttttaaagattatgttattttcagtaactaaagtaaaaaaagtcacta
taattttaaaataccttTCCGGCAATTTATTCCTTTTAATTTTTGCAGTA
AGTACTAATTGTAAAGTACTAATTAGTCAGCCCCGGTgactcttcaaatc
ggttcgacgatttttttcccgctggtcgtcgtcgtcgttaagactttcat
ttttaattccgatttcggattattttcgggaaaCAGGATTTCGGGATTAT
TTAGCGCGCggataaaataagaaaagaaaaaaacacataacataaaaaga
cgcgtataattaataataagaaaaaaagaagagaaaaaaaattctttttt
gcgtcatatccaatagttaataaaagatgcttttgcattgtaaataaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgaacctaaatgaacacctgaaaagtg
ggatgggggaacctaagtgggaacctaaatgaacacctgaaaagtgggat
gggggaacctaagtgggaacctaaatttttatttttattattattttttt
tttattatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGCATTTAACGGATTCTA
gctcgtttttctttctgtaccaaccaaacagtacagcgtgtgaatacact
tcattaattaaaaatgtttgatagtAAAATAGACATATTGCACGGCTTGC
CACGTTTCAATACACATAGGCAtagggggcactcaaggtaaacgacctac
cgtacgtgcggcccttttttccaagcttcccaaagtacactgtaagggtg
gaaataagcaaaaatgagaataagtTCACTCTAAGGGtttcaaatttggt
caaaggactggcttttagaatttcatccgaacaagtgtcatgttttaaca
ctgggtaaattttggaacatcaaatatgTCCATCCCTATACCATAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcaggagcttc
gaatttctctcaccagatatgtttcgaacgcttttcattgcatttgtcag
accccatttggaatatgcacatgTAGTATGGTCTCCAAGGCTAAACAAAC
ATATCAAAGCAATTgagggcgtccaacgaagagctacaaggctagttagt
tgctatagaaactactcatacgaagatcgggtacgactcatcaatctacc
tagcctaaagaccaggtggcaagttggtgatatggtggaagttttcaaga
acctccacatttatgacgagtctataagatcagagaaatttactcctcga
acacgaccacgacgtcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
ctttcccacttaggttcccccatcccacttttcaggtgttcatttaggtt
cccactttaggttcccgggttcccccatcccacttatccggtatgccaaT
AAAGAGAGCTAATTATAGAGCAGAGAAAGCATATATGGAGAAAGTGagta
tatcaaagaaatttttttccttcgaATAATGTTAAAAGTTATATACTGGG
AGTTTcaaaacatcgaccagaaatggcgaccacgaccagcgaccacgacc
ggcgaccagataaatttgggttatcgagtttttcctctttctccacctTA
GAGTCTTTCTTCTATGATCAATTACttatcgaattgaagagtaaagctca
cccctgtctcacctacagtaattataaagccacgtgcaaaacgtATAGAA
cagccatttcaacgctcttggagctNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaattgatgagattgatatctctaa
aactgccctTCCCAGCTTTTGcctactgacaatttctatctattcatact
aaaggcatctcattcagcataattaaagtatttggtgtaataaagtttac
aggcatcacacttaattgccctgtcaatatttttgtcaaaaagtgtcact
ttgtctagaaaataACTGGTAAcgtcaaaggtcacttttagtATTCTAAG
CTACAGTAATTTTCTAagccacgtgctcagtggttcatttgaaagccaca
ccaggactcgatttggatgttctctacggtggagagagcagataaactcg
ataacccaaatctatctggtcgccggtcgttgTCGCTGGttgtggtcgcc
atttctggtcgatgtttagaaactcccttatATACTACTTGTAGACTATT
TCTTCTATCTGGGTCTTTTATTATTGTCATGGAAAGAGTATAACAACAAC
GGAATAAATCTTTTTCACCGACTTCTGCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGCACTGCTCTGTTTTCTTctgaacg
tttcaagcaaatagATACGTTCTTTCAAGCTGCTCAGATTTTAACAAAGC
CAGATTTCTTATCTGTACTTCCTATTAATCCTTCTAAGCCTTCTAAGCAT
tttgggctgactttccagcgcagctggtttattctcaacttcagttgagc
tacaatctgacaatgtctgtctgtctgtgtgtgtgtgtgtgtgtctgtct
gtcacaaaaactttagggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtg
aatatctgggggtgtttttttcatttttcaaaaattttgatttttggggc
ctggggacgagtttttcgccaaaacgaggctaaaatttcggggcagcctg
gagacttcaaaaattgttcgatctggctgacattttgcacacttgttcct
tgggtgaatatctgggggtgctttttgcatttttcaaaaatttagatttt
tggggcctggggacgagttttttacCAAAACGAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTttcattgggtaaatatctggtggtctacaattgggccta
tgaataatttgaagccactgaagttgagcccagtgcgttgcgcacgttcg
actattataGATATAGCGCTTGAAATAACAGAAAAATACCGGTATTTGCG
TCACTTCTCCACCTGTGGTGTACAAAGAGATCTCTACCTTAATAAACCCC
ACCCCTTTTCGCTGCTATCGTTGAGTGTTCTTCATTTAAGACAAAATTGT
ATGATATCagtcaaaattatattttaattaaAATAATACTACAAAACTTC
TAACTGGAAACGTTCTCTTTATCGTCCCTTTATCAAATTTACTGGTCAGA
AGCaaaacaaactttgaaaataatgCACACTATGGAAtatgtttttacaa
aaatagtgATAGTCGAACTCGTTCTGTGGCCTTATacataatagcgagtt
tatgtattcgagataaatcgagggtgACGGtatcgacgacggtaaaaaca
ccaagataccgtcgtctgtttaggtaccttaagggaagaaattttcgcga
gaagaaattttcgcggaatttaatttcgcgaatgattcgattttaaaagt
ttcacggaatttaatttcgcgattgagaagaatttatcaacttagattaa
cttttaagcatcacggagttgtttatatttgtttatatttgataaaaaat
acacgttataatgcttaaaaatcaattgtgtccatctttttttggtaata
cctagtcaaaaacaaccaaataaaagaagaagaaaaaaaatcaaatttcg
cggaatttaatttcgcgatttaacaattttggtgtgtttcgcggaattta
atttcgcgaattatgcccaaattcgcgaaattaaattccgcgaaaatttc
ttccgcgaaaattttttctcgcgaaaatttcttcccttaaggtaagcaaa
ggcgatatagagccgtacaccaactttgttttgtatcgatttcacttacc
gtagccctcgatatcctccaatacataaactcggtaatgaaAGACCTTGG
CAATTTTAAGCATTTGACGGTTAACCCATTTGACGATGTGTTATGTAAAG
ATCCTACAAATAAGTCTCCAATCCCTAACAATCCTAAAATTTCTTTCGAA
TCATTTCATTACAGAGAAAAGGAAGCAGGTTGGGAAGAACAAGTACAGAA
TGCGGTGCTGGAGAAATGTCAAGAAGCTGGTGGTGATATCCTTCACGTCT
TCGTTGATAAAACTTCTAAAGAGGTACAGTACACAAACTCgctattttat
aagaattctCGTTAACATATAGACAATTTTGTAAATCGTATCAGAGTCTA
cttttaatttttgatgacaCTAAATTAGACATCGAAAAACCTGAAGTGGT
ATCCATGCTATTGTTAGATCGGCATCCCTTCTGATTTGAGTTAAATTGAT
TTGATATTATTCAAGTGAAATCAGAAAAAGGATGCATACAGCTAAAGTTT
TCAAtggttgaaatattttgaaatactttatTCTACAGGGTTGTGTCTAC
GTCAAGTGTTTGAATATTGAGTCAGCTGGCAAATCGTTTCGTGCCATGTA
CGGCAATTGGTTTGATGGTATGTGAAATTTCTCTCCTTCTTTCTTCTTCA
ACCTTGAACAATCGTACCCGAATTAGTATTTAGGTGGACGTGACTGAGGA
ATGAACTTAAAACCGTATAGCATCTCAAAAGCTAACCTTCCGATACCATT
GAAGACTCAGAACATAACATTTGAAATAAGATAAAGTTACATGACAAGAT
ACATATCGTCTTGAAGTGTAAATTTACttaatttttcacaatttatttCT
GTCTAGGTCGATTAGTAATCGTGAAATTTGTCACATTGGCTCGCTATCAC
CAACGTTTTCCTGAAGCTCTCGCCCATACCGCCCCCTTACGCCCTTCAAA
TACCATCGATTCTTCAATGAACTGGAATCTCTCATCCTGAACATAAGGGT
GGTGGGTGGTTGTTTTTACAAAGTTCCTATCAATACTAACCGTTGTTATT
CGAAGAGAAATGTCTCAAATGGTTGGGATTTAATTCGTGCGTATGTGGCC
AAGACGATCAAGTCTAAGCGAATGGGTTCCATGAATTTTTCGTGGTACGA
CGCTCTTTAAAGAAATAACAGGATTCGTTGGGTTNGATTTTTCGTGGTAC
GACGCTCTTTAAAGAAATAACAGGATTCGTCAGGTCAAAACGGGAACATC
GATTTTCGATCGAGATTTAATGGAATTTGAGCCCTAACAGATTTTGTACG
TCAAAAACATTTCGTACGTGTTGTATTTTCCAGAACAATATGTTCATTAA
TCTACAGAACAAACATTTTTAAGTTGAAAACATTCACCgaatttgttaca
atttttttcaagagctgaaaattattattataagtATTATGATAAACAGT
TAATAATTTTTGTCTTGGTATATGTACTCCATTTAGATAACTtccttgta
aatattttttaaactttctttttgagatttcttcctCAAATGATTTGGTA
CTGGCAATACTCTTAAGGTCTGGGGCCACTTGAAACGTTTTTCATCAAAC
AGaacatttgaaaactgaaacacGCAAGAAGTttcactttgataaaaaaa
atgacGGAA

Coding sequence (CDS) from alignment at sc0000376:275692..286000+

>TCONS_00020992 ID=TCONS_00020992|Name=TCONS_00020992|organism=Clytia hemisphaerica|type=CDS|length=3744bp|location=Sequence derived from alignment at sc0000376:275692..286000+ (Clytia hemisphaerica)
atggcaaaaatttggcGAAAAGCAGTCGACTTTTTGAACTCGTCCGATTC
GCGTGTTCGCGTGGAAACACAACAAATCGCAGGTGAAGATTTCGAGGTTT
GGAGATGGATTGGTGTGTGCATTCCAAAGCCCagtaaaaagcaaaagaaa
gaaagccTCTCAAGTCCACGACATcttcAACAATTACAATCCTGTAAAAG
CTGGCAAGGGCGAGcGTTTGACGAGATAAATGATGTTGTAAAAATGCCGA
TTGTTCCCCCTACACCTTGTTTGAAAATTAGATACCTCCATGAAGGACCA
GAAGAAAAGGAAGCAGGTTGGGAAGAACAAGTACAGAATGCGGTGCTGGA
GAAATGTCAAGAAGCTGGTGGTGATATCCTTCACGTCTTCGTTGATAAAA
CTTCTAAAGAGGGTTGTGTCTACGTCAAGTGTTTGAATATTGAGTCAGCT
GGCAAATCGTTTCGTGCCATGTACGGCAATTGGTTTGATGGTCGATTAGT
AATCGTGAAATTTGTCACATTGGCTCGCTATCACCAACGTTTTCCTGAAG
CTCTCGCCCATACCGCCCCCTTACGCCCTTCAAATACCATCGATTCTTCA
ATGAACTGGAATCTCTCATCCTGAatggcaaaaatttggcGAAAAGCAGT
CGACTTTTTGAACTCGTCCGATTCGCGTGTTCGCGTGGAAACACAACAAA
TCGCAGGTGAAGATTTCGAGGTTTGGAGATGGATTGGTGTGTGCATTCCA
AAGCCCagtaaaaagcaaaagaaagaaagccTCTCAAGTCCACGACATct
tcAACAATTACAATCCTGTAAAAGCTGGCAAGGGCGAGcGTTTGACGAGA
TAAATGATGTTGTAAAAATGCCGATTGTTCCCCCTACACCTTGTTTGAAA
ATTAGATACCTCCATGAAGGACCAGAAGAAAAGGAAGCAGGTTGGGAAGA
ACAAGTACAGAATGCGGTGCTGGAGAAATGTCAAGAAGCTGGTGGTGATA
TCCTTCACGTCTTCGTTGATAAAACTTCTAAAGAGGGTTGTGTCTACGTC
AAGTGTTTGAATATTGAGTCAGCTGGCAAATCGTTTCGTGCCATGTACGG
CAATTGGTTTGATGGTCGATTAGTAATCGTGAAATTTGTCACATTGGCTC
GCTATCACCAACGTTTTCCTGAAGCTCTCGCCCATACCGCCCCCTTACGC
CCTTCAAATACCATCGATTCTTCAATGAACTGGAATCTCTCATCCTGAat
ggcaaaaatttggcGAAAAGCAGTCGACTTTTTGAACTCGTCCGATTCGC
GTGTTCGCGTGGAAACACAACAAATCGCAGGTGAAGATTTCGAGGTTTGG
AGATGGATTGGTGTGTGCATTCCAAAGCCCagtaaaaagcaaaagaaaga
aagccTCTCAAGTCCACGACATcttcAACAATTACAATCCTGTAAAAGCT
GGCAAGGGCGAGcGTTTGACGAGATAAATGATGTTGTAAAAATGCCGATT
GTTCCCCCTACACCTTGTTTGAAAATTAGATACCTCCATGAAGGACCAGA
AGAAAAGGAAGCAGGTTGGGAAGAACAAGTACAGAATGCGGTGCTGGAGA
AATGTCAAGAAGCTGGTGGTGATATCCTTCACGTCTTCGTTGATAAAACT
TCTAAAGAGGGTTGTGTCTACGTCAAGTGTTTGAATATTGAGTCAGCTGG
CAAATCGTTTCGTGCCATGTACGGCAATTGGTTTGATGGTCGATTAGTAA
TCGTGAAATTTGTCACATTGGCTCGCTATCACCAACGTTTTCCTGAAGCT
CTCGCCCATACCGCCCCCTTACGCCCTTCAAATACCATCGATTCTTCAAT
GAACTGGAATCTCTCATCCTGAatggcaaaaatttggcGAAAAGCAGTCG
ACTTTTTGAACTCGTCCGATTCGCGTGTTCGCGTGGAAACACAACAAATC
GCAGGTGAAGATTTCGAGGTTTGGAGATGGATTGGTGTGTGCATTCCAAA
GCCCagtaaaaagcaaaagaaagaaagccTCTCAAGTCCACGACATcttc
AACAATTACAATCCTGTAAAAGCTGGCAAGGGCGAGcGTTTGACGAGATA
AATGATGTTGTAAAAATGCCGATTGTTCCCCCTACACCTTGTTTGAAAAT
TAGATACCTCCATGAAGGACCAGAAGAAAAGGAAGCAGGTTGGGAAGAAC
AAGTACAGAATGCGGTGCTGGAGAAATGTCAAGAAGCTGGTGGTGATATC
CTTCACGTCTTCGTTGATAAAACTTCTAAAGAGGGTTGTGTCTACGTCAA
GTGTTTGAATATTGAGTCAGCTGGCAAATCGTTTCGTGCCATGTACGGCA
ATTGGTTTGATGGTCGATTAGTAATCGTGAAATTTGTCACATTGGCTCGC
TATCACCAACGTTTTCCTGAAGCTCTCGCCCATACCGCCCCCTTACGCCC
TTCAAATACCATCGATTCTTCAATGAACTGGAATCTCTCATCCTGAatgg
caaaaatttggcGAAAAGCAGTCGACTTTTTGAACTCGTCCGATTCGCGT
GTTCGCGTGGAAACACAACAAATCGCAGGTGAAGATTTCGAGGTTTGGAG
ATGGATTGGTGTGTGCATTCCAAAGCCCagtaaaaagcaaaagaaagaaa
gccTCTCAAGTCCACGACATcttcAACAATTACAATCCTGTAAAAGCTGG
CAAGGGCGAGcGTTTGACGAGATAAATGATGTTGTAAAAATGCCGATTGT
TCCCCCTACACCTTGTTTGAAAATTAGATACCTCCATGAAGGACCAGAAG
AAAAGGAAGCAGGTTGGGAAGAACAAGTACAGAATGCGGTGCTGGAGAAA
TGTCAAGAAGCTGGTGGTGATATCCTTCACGTCTTCGTTGATAAAACTTC
TAAAGAGGGTTGTGTCTACGTCAAGTGTTTGAATATTGAGTCAGCTGGCA
AATCGTTTCGTGCCATGTACGGCAATTGGTTTGATGGTCGATTAGTAATC
GTGAAATTTGTCACATTGGCTCGCTATCACCAACGTTTTCCTGAAGCTCT
CGCCCATACCGCCCCCTTACGCCCTTCAAATACCATCGATTCTTCAATGA
ACTGGAATCTCTCATCCTGAatggcaaaaatttggcGAAAAGCAGTCGAC
TTTTTGAACTCGTCCGATTCGCGTGTTCGCGTGGAAACACAACAAATCGC
AGGTGAAGATTTCGAGGTTTGGAGATGGATTGGTGTGTGCATTCCAAAGC
CCagtaaaaagcaaaagaaagaaagccTCTCAAGTCCACGACATcttcAA
CAATTACAATCCTGTAAAAGCTGGCAAGGGCGAGcGTTTGACGAGATAAA
TGATGTTGTAAAAATGCCGATTGTTCCCCCTACACCTTGTTTGAAAATTA
GATACCTCCATGAAGGACCAGAAGAAAAGGAAGCAGGTTGGGAAGAACAA
GTACAGAATGCGGTGCTGGAGAAATGTCAAGAAGCTGGTGGTGATATCCT
TCACGTCTTCGTTGATAAAACTTCTAAAGAGGGTTGTGTCTACGTCAAGT
GTTTGAATATTGAGTCAGCTGGCAAATCGTTTCGTGCCATGTACGGCAAT
TGGTTTGATGGTCGATTAGTAATCGTGAAATTTGTCACATTGGCTCGCTA
TCACCAACGTTTTCCTGAAGCTCTCGCCCATACCGCCCCCTTACGCCCTT
CAAATACCATCGATTCTTCAATGAACTGGAATCTCTCATCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011774XLOC_011774Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020992-proteinTCONS_00020992-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020992-exon-sc0000376-1491911889:275692..275715TCONS_00020992-exon-sc0000376-1491911889:275692..275715Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:275692..275715TCONS_00020992-exon-sc0000376-1510915933:275692..275715Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:275692..275715TCONS_00020992-exon-sc0000376-1575043694:275692..275715Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:276567..276747TCONS_00020992-exon-sc0000376-1491911889:276567..276747Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:276567..276747TCONS_00020992-exon-sc0000376-1510915933:276567..276747Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:276567..276747TCONS_00020992-exon-sc0000376-1575043694:276567..276747Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:277313..277352TCONS_00020992-exon-sc0000376-1491911889:277313..277352Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:277313..277352TCONS_00020992-exon-sc0000376-1510915933:277313..277352Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:277313..277352TCONS_00020992-exon-sc0000376-1575043694:277313..277352Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:277792..277879TCONS_00020992-exon-sc0000376-1491911889:277792..277879Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:277792..277879TCONS_00020992-exon-sc0000376-1510915933:277792..277879Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:277792..277879TCONS_00020992-exon-sc0000376-1575043694:277792..277879Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:284506..284614TCONS_00020992-exon-sc0000376-1491911889:284506..284614Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:284506..284614TCONS_00020992-exon-sc0000376-1510915933:284506..284614Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:284506..284614TCONS_00020992-exon-sc0000376-1575043694:284506..284614Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:284880..284958TCONS_00020992-exon-sc0000376-1491911889:284880..284958Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:284880..284958TCONS_00020992-exon-sc0000376-1510915933:284880..284958Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:284880..284958TCONS_00020992-exon-sc0000376-1575043694:284880..284958Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:285198..285522TCONS_00020992-exon-sc0000376-1491911889:285198..285522Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:285198..285522TCONS_00020992-exon-sc0000376-1510915933:285198..285522Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:285198..285522TCONS_00020992-exon-sc0000376-1575043694:285198..285522Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1491911889:285575..286000TCONS_00020992-exon-sc0000376-1491911889:285575..286000Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1510915933:285575..286000TCONS_00020992-exon-sc0000376-1510915933:285575..286000Clytia hemisphaericaexon
TCONS_00020992-exon-sc0000376-1575043694:285575..286000TCONS_00020992-exon-sc0000376-1575043694:285575..286000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:275692..286000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3754	10.5437	39.5321	50.2788	43.5909	27.1248	42.7162	42.7016	23.0629	23.277	15.0621	18.3023	18.8761	14.3911	15.8605	18.5307	35.5107	38.3905	9.81752	14.533	35.7175	32.0284	26.8604	24.5374	11.6086	21.1526	9.72941	5.27415	17.3761	20.3781
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00020992 vs. Swiss-Prot (Human)
Match: MAN1 (Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 4.141e-49
Identity = 101/205 (49.27%), Postives = 131/205 (63.90%), Query Frame = 2 
Query:   23 RKKMAKIWRKAVDFLNSSDSRVRVETQQIAGEDFEVWRWIGVCIPKPSKKQKKESLSSPRHLQQLQSCKSWQGRAFDEINDVVKMPIVPPTPCLKIRYLHXXXXXXXXXXXXQVQNAVLEKCQEAGGDILHVFVDKTSKEGCVYVKCLNIESAGKSFRAMYGNWFDGRLVIVKFVTLARYHQRFPEALAHTAPLRPSNTIDSSMN 637
            RKKM K+W +AVDFL +++SRVR ET++I G DF VWRWI     +PS    K  L  P         K WQG+AF    D    P    TPCLKIR + +   E    W   +Q A+LEKC +  G I+H+ VDK S+EGCVYVKCL+ E AGK+F+A++G+WFDG+LV VK++ L RYH RFP+AL    PL+PSN   +SM+
Sbjct:  709 RKKMKKVWDRAVDFLAANESRVRTETRRIGGADFLVWRWI-----QPSASCDK-ILVIP--------SKVWQGQAFHL--DRRNSPPNSLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDG-IVHIAVDKNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSMS 896
The following BLAST results are available for this feature:
BLAST of TCONS_00020992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAN14.141e-4949.27Inner nuclear membrane protein Man1 OS=Homo sapien... [more]
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