TCONS_00021053-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021053-protein
Unique NameTCONS_00021053-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021053-protein ID=TCONS_00021053-protein|Name=TCONS_00021053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MLYAGTRTTMKLEFGGGSITEEIFATLKSDVTLRGFREHKDLKAADAPMT
YQEEELKEVKQMHISAAATTKASTLPGISFPMSEEAINELVRIASKEVSY
VQLSIDVNKEMINLEKTCDIETSQLAGEVPTDKPRYHFFLFKHTHEGDYL
ESIVFIYSMPGYACSVKERMLYSSCKATLLSGCEDVLKMEVTKKLEISEG
SELTEEFLQDELHPKKNLHRPKFSKPKPPSRGAKRIIKPSANAES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011807XLOC_011807Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021053TCONS_00021053Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002108ADF-H
IPR029006ADF-H/Gelsolin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0003779 actin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainSMARTSM00102adf_2coord: 81..213
e-value: 2.6E-27
score: 106.7
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 92..210
e-value: 3.1E-23
score: 82.2
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 1..41
score: 8.484
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 75..213
score: 20.53
IPR029006ADF-H/Gelsolin-like domainGENE3D3.40.20.10coord: 1..44
e-value: 1.0E-4
score: 21.4
IPR029006ADF-H/Gelsolin-like domainGENE3D3.40.20.10coord: 59..225
e-value: 1.9E-33
score: 114.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..245
NoneNo IPR availableCDDcd11284ADF_Twf-C_likecoord: 76..211
e-value: 1.73321E-52
score: 167.794
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 1..53
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 73..218

Blast
[Close]
BLAST of TCONS_00021053-protein vs. Swiss-Prot (Human)
Match: TWF1 (Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 3.773e-88
Identity = 123/249 (49.40%), Postives = 176/249 (70.68%), Query Frame = 0 
Query:    1 MLYAGTRTTMKLEFGGGSITEEIFATLKSDVTLRGFREHKDLKAADAPMTYQEEELKEVK--QMHISAAATTKASTLPGISFPMSEEAINELVRIASKEVSYVQLSIDVNKEMINLEKTCDIETSQLAGEVPTDKPRYHFFLFKHTHEGDYLESIVFIYSMPGYACSVKERMLYSSCKATLLSGCEDVLKMEVTKKLEISEGSELTEEFLQDELHPKKNLHRPKFSKPKPPS--RGAKRIIKPSANAES 245
            MLYA TR T+K EFGGG I +E+F T+K DV+L G++++   +++ AP+T  EEEL+++K  ++       TK  TL G++FP+S EA   L ++ +++++YVQL ID+  E+I L  T + E   L   +P D  RYHFFL+KH+HEGDYLESIVFIYSMPGY CS++ERMLYSSCK+ LL   E  L+M+V +K+EI  G ELT +FL +E+HPK++ H+  F+KPK P+  RG +R+I+  A  E+
Sbjct:   99 MLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEA 347
The following BLAST results are available for this feature:
BLAST of TCONS_00021053-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TWF13.773e-8849.40Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3[more]
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