TCONS_00021209-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021209-protein
Unique NameTCONS_00021209-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021209-protein ID=TCONS_00021209-protein|Name=TCONS_00021209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MAKDNVPFHTVVFPSSLIAANDNYVLLNDINATEYLNYEEDKFSKSRGVG
VFGDQAKDTGISADIFRFYLLFVRPESSDSAFQWADLITKNNSELLNNLG
NFVNRALMFLKNSFNSTMPELKLNEEDYKLITHVDKELQEYVTHLDSIKL
RDGLKFILNISRHGNQYIQANKPWVMVKGTDAEKERAGTVIGLATNVSAL
LCILVKPYMPAISSTLQQQLALADDKFVIPDNFVQLLPTGHVSGTPAPLF
QKLEVAFGEEMKKRFAGKRPEPNEKKTAKKAAQSKTTPSQTPATTSSTPA
VTADPAKIKELEEKVTKQGNLVRELKTSGADKAKITEEVQALLAVKRELA
LATGENPDEKPKGKKKGKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011871XLOC_011871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021209TCONS_00021209Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000738WHEP-TRS_dom
IPR009080tRNAsynth_Ia_anticodon-bd
IPR014729Rossmann-like_a/b/a_fold
IPR015413Methionyl/Leucyl_tRNA_Synth
IPR009068S15_NS1_RNA-bd
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..328
NoneNo IPR availableGENE3D1.10.287.10coord: 304..356
e-value: 5.7E-15
score: 54.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..370
NoneNo IPR availableCDDcd00939MetRS_RNAcoord: 311..354
e-value: 1.26092E-11
score: 58.2526
NoneNo IPR availableCDDcd07957Anticodon_Ia_Metcoord: 91..220
e-value: 3.65346E-39
score: 136.08
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 2..94
IPR000738WHEP-TRS domainSMARTSM00991WHEP_TRS_a_2_a_3_acoord: 311..368
e-value: 8.5E-13
score: 58.5
IPR000738WHEP-TRS domainPFAMPF00458WHEP-TRScoord: 311..358
e-value: 6.4E-15
score: 55.0
IPR000738WHEP-TRS domainPROSITEPS51185WHEP_TRS_2coord: 307..363
score: 11.538
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingGENE3D1.10.730.10coord: 91..256
e-value: 5.6E-33
score: 113.6
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 95..253
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 1..90
e-value: 1.3E-11
score: 43.3
IPR015413Methionyl/Leucyl tRNA synthetasePFAMPF09334tRNA-synt_1gcoord: 1..106
e-value: 1.7E-31
score: 109.3
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 308..357

Blast
[Close]
BLAST of TCONS_00021209-protein vs. Swiss-Prot (Human)
Match: SYMC (Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2)

HSP 1 Score: 396.356 bits (1017), Expect = 6.752e-131
Identity = 197/367 (53.68%), Postives = 259/367 (70.57%), Query Frame = 0 
Query:    1 MAKDNVPFHTVVFPSSLIAANDNYVLLNDINATEYLNYEEDKFSKSRGVGVFGDQAKDTGISADIFRFYLLFVRPESSDSAFQWADLITKNNSELLNNLGNFVNRALMFLKNSFNSTMPELKLNEEDYKLITHVDKELQEYVTHLDSIKLRDGLKFILNISRHGNQYIQANKPWVMVKGTDAEKERAGTVIGLATNVSALLCILVKPYMPAISSTLQQQLALADDKF-VIPDNFVQLLPTGHVSGTPAPLFQKLEVAFGEEMKKRFAGKRPEPNEKKTAKKAAQSKTTPSQTPATTSSTPAVTADPAKIKELEEKVTKQGNLVRELKTSGADKAKITEEVQALLAVKRELALATGENPDEKPKGKKK 366
            MAKDNVPFH++VFP S + A DNY L++ + ATEYLNYE+ KFSKSRGVGVFGD A+DTGI ADI+RFYLL++RPE  DSAF W DL+ KNNSELLNNLGNF+NRA MF+   F   +PE+ L  +D +L+ HV  ELQ Y   L+ +++RD L+ IL ISRHGNQYIQ N+PW  +KG++A+++RAGTV GLA N++ALL ++++PYMP +S+T+Q QL L      ++  NF+  LP GH  GT +PLFQKLE    E +++RF G               Q+KT+P   PA   +    TA P +I+ L ++VTKQGN+VRELK   ADK ++  EV  LL +K++LA+A G+ P E PKGKKK
Sbjct:  552 MAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGG--------------GQAKTSPK--PAVVETV--TTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGK-PPEAPKGKKK 899
The following BLAST results are available for this feature:
BLAST of TCONS_00021209-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYMC6.752e-13153.68Methionine--tRNA ligase, cytoplasmic OS=Homo sapie... [more]
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