TCONS_00021329-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021329-protein
Unique NameTCONS_00021329-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021329-protein ID=TCONS_00021329-protein|Name=TCONS_00021329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp
MPKRKQESRKVRPEILPSKDENEFLLDKLQNEEDDMSDSDESVYSGLEEE
ADTDSEEGDEVKEINSEGEEENEESTDADDEDDSEEEEEEEEEEESSDED
ELQIKQTKSSSDTNEDHAENEKGGDVVKEVRKKAVFEDVDTSDEEDIRNT
VGNIPMEWYKDYLHIGYDLDGNKIGKKEQGDQLDNFLTKMEDPDYWRTVR
DKVNMEDIKLTDEEIEIIQRIEGGQYADKDFDPYEPYVDHFTSETMIHPI
KDNPSTKRSFTPSIWEHKKVMKIVRAIRNGWIKPKVKSDGQPKYYLIWGK
DDRPNDHPMRWAAPKLKLPGHEESYNPPPEYLPTEEEKAAWEALDPEDRP
QNYLSQKFDALRKVPGYSNFIQERFERCLDLYLCPRQRKVRLNINPEDLI
PKLPRPKDLQPFPTTEGVRYKGHTDVVRCISVDPTGQWLASGSSDNTIRF
WEVITGRCMKTLNVEGTVNSLEWNPQDTIPILVAAVDTDMFIINPGLGDK
LLCKNIDNKMNTTSEDFQQSELATWSKCNKKDNELGFRLKISHSKPVKQV
TWHGKGDYIAAVIPDGESKSVAIHQLSKGKSQCPFKKSKGQIQCVRFHPT
RPFFFVATQRYIRVYNLQKQELTKKLVSGIKWISCLDIHPTGDNLIIGGY
DKRLCWFDMDLSTKPYKTLRHHKRAIRQVTYHKQYPLFASSSDDGTVIIS
HGKVFSDLMQNPLIVPLKILRGHQVTNDLGVVDCQFHPHQPWVFSAGADK
TIRLFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011949XLOC_011949Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021329TCONS_00021329Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012953BOP1_N_dom
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR028598BOP1/Erb1
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..105
NoneNo IPR availableGENE3D1.10.10.670coord: 576..616
e-value: 4.8E-5
score: 22.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..126
NoneNo IPR availableCDDcd00200WD40coord: 420..755
e-value: 1.59507E-39
score: 146.711
IPR012953BOP1, N-terminal domainSMARTSM01035BOP1NT_2coord: 159..413
e-value: 3.2E-155
score: 531.6
IPR012953BOP1, N-terminal domainPFAMPF08145BOP1NTcoord: 159..413
e-value: 1.5E-110
score: 369.1
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 713..756
e-value: 7.4E-4
score: 28.8
coord: 532..575
e-value: 15.0
score: 9.7
coord: 662..701
e-value: 6.2E-4
score: 29.1
coord: 413..452
e-value: 3.3E-9
score: 46.6
coord: 578..616
e-value: 2.2
score: 14.8
coord: 619..658
e-value: 0.057
score: 22.5
coord: 455..494
e-value: 21.0
score: 8.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 716..755
e-value: 1.0E-5
score: 26.1
coord: 420..451
e-value: 5.8E-9
score: 36.3
coord: 665..699
e-value: 0.073
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 420..461
score: 16.691
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 671..756
e-value: 1.6E-12
score: 46.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 34..575
e-value: 2.8E-29
score: 101.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 617..670
e-value: 1.7E-11
score: 43.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 439..453
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 420..461
score: 15.03
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 585..756
score: 10.944
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 377..495
coord: 531..755
IPR028598WD repeat BOP1/Erb1HAMAPMF_03027BOP1coord: 3..756
score: 48.695

Blast
[Close]
BLAST of TCONS_00021329-protein vs. Swiss-Prot (Human)
Match: BOP1 (Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2)

HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 371/737 (50.34%), Postives = 512/737 (69.47%), Query Frame = 0 
Query:   26 LDKLQNEEDDMSDSDESVYSGLEEEADTDSEEGDEVKEINSEGEEENEESTDADDEDDSEEEEEEEEEEESSDEDELQIKQTKSSSDTNEDHAENEKGGDVVKEVRKKAVFEDVDTSDEEDIRNTVGNIPMEWYKDYLHIGYDLDGNKIGKKEQG-DQLDNFLTKMEDPDYWRTVRDKVNMEDIKLTDEEIEIIQRIEGGQYADKDFDPYEPYVDHFTSETMIHPIKDNPSTKRSFTPSIWEHKKVMKIVRAIRNGWIKPKVKSDGQPKYYLIWGKDDRPND----HPMRWAAPKLKLPGHEESYNPPPEYLPTEEEKAAWEALDPEDRPQNYLSQKFDALRKVPGYSNFIQERFERCLDLYLCPRQRKVRLNINPEDLIPKLPRPKDLQPFPTTEGVRYKGHTDVVRCISVDPTGQWLASGSSDNTIRFWEVITGRCMKTLNVEGTVNSLEWNPQDTIPILVAAVDTDMFIINPGLGDKLLCKNIDNKMNT-TSEDFQQSELATWSKCNKKDNELGFRLKISHSKPVKQVTWHGKGDYIAAVIPDGESKSVAIHQLSKGKSQCPFKKSKGQIQCVRFHPTRPFFFVATQRYIRVYNLQKQELTKKLVSGIKWISCLDIHPTGDNLIIGGYDKRLCWFDMDLSTKPYKTLRHHKRAIRQVTYHKQYPLFASSSDDGTVIISHGKVFSDLMQNPLIVPLKILRGHQVTNDLGVVDCQFHPHQPWVFSAGADKTIRLFT 756
            L      +  +SDS+ESV+SGLE+     SE        + +  +E  E    DDE  S  ++  EE+ ++S       +   +S+   +++AE                    D+SDEEDIRNTVGN+P+EWY D+ H+GYDLDG +I K  +  D+LD FL KM+DPDYWRTV+D +   D++LTDE++ +++R++ GQ+ D  F+PYEP VD F+ + MIHP+ + P+ KRSF PS+ E +KV ++V AI+ GWI+P+   D  P +Y +W ++D PN     H M   APKL LPGH ESYNPPPEYL +EEE+ AWE  +P +R  ++L +KF +LR VP Y  FIQERFERCLDLYLCPRQRK+R+N++PEDLIPKLPRP+DLQPFPT + + Y+GH+D+VRC+SV P GQWL SGS D ++R WEV T RC++T+ V G V S+ WNP   + ++ AAV+  + ++NP LGD+L+  + D  ++     +    + A W + ++++ ++G RL+I H KPV QVTWHG+GDY+A V+       V IHQLS+ +SQ PF++S GQ+Q V FHP RPF  VA+QR +R+Y+L +QELTKKL+   KW+S L +HP GDN+I G YD +L WFD+DLSTKPY+ LRHHK+A+R V +H +YPLFAS SDDG+VI+ HG V++DL+QNPL+VP+K+L+GH +T DLGV+D  FHP QPWVFS+GAD T+RLFT
Sbjct:   42 LSHSTGSDSGVSDSEESVFSGLEDSGSDSSE--------DDDEGDEEGEDGALDDEGHSGIKKTTEEQVQASTPCP---RTEMASARIGDEYAE--------------------DSSDEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDPMTGRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRPADKRSFIPSLVEKEKVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQED-PNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPSPAVCLVAAAVEDSVLLLNPALGDRLVAGSTDQLLSAFVPPEEPPLQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRRRSQSPFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHLLRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLFT 746
The following BLAST results are available for this feature:
BLAST of TCONS_00021329-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOP10.000e+050.34Ribosome biogenesis protein BOP1 OS=Homo sapiens G... [more]
back to top