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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021329 ID=TCONS_00021329|Name=TCONS_00021329|organism=Clytia hemisphaerica|type=transcript|length=2552bpRun BLAST on NCBI protein sequence of TCONS_00021329-protein >TCONS_00021329-protein ID=TCONS_00021329-protein|Name=TCONS_00021329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp MPKRKQESRKVRPEILPSKDENEFLLDKLQNEEDDMSDSDESVYSGLEEERun BLAST on NCBI transcript from alignment at sc0000385:79443..90530+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021329 ID=TCONS_00021329|Name=TCONS_00021329|organism=Clytia hemisphaerica|type=transcript|length=11088bp|location=Sequence derived from alignment at sc0000385:79443..90530+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:79443..90530+ >TCONS_00021329 ID=TCONS_00021329|Name=TCONS_00021329|organism=Clytia hemisphaerica|type=CDS|length=49962bp|location=Sequence derived from alignment at sc0000385:79443..90530+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021329 vs. Swiss-Prot (Human)
Match: BOP1 (Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2) HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0 Identity = 346/623 (55.54%), Postives = 468/623 (75.12%), Query Frame = 3
Query: 558 DTSDEEDIRNTVGNIPMEWYKDYLHIGYDLDGNKIGKKEQG-DQLDNFLTKMEDPDYWRTVRDKVNMEDIKLTDXXXXXXXXXXXXXYADKDFDPYEPYVDHFTSETMIHPIKDNPSTKRSFTPSIWEHKKVMKIVRAIRNGWIKPKVKSDGQPKYYLIWGKDDRPND----HPMRWAAPKLKLPGHEESYNPPPEYLPTEEEKAAWEALDPEDRPQNYLSQKFDALRKVPGYSNFIQERFERCLDLYLCPRQRKVRLNINPEDLIPKLPRPKDLQPFPTTEGVRYKGHTDVVRCISVDPTGQWLASGSSDNTIRFWEVITGRCMKTLNVEGTVNSLEWNPQDTIPILVAAVDTDMFIINPGLGDKLLCKNIDNKMNT-TSEDFQQSELATWSKCNKKDNELGFRLKISHSKPVKQVTWHGKGDYIAAVIPDGESKSVAIHQLSKGKSQCPFKKSKGQIQCVRFHPTRPFFFVATQRYIRVYNLQKQELTKKLVSGIKWISCLDIHPTGDNLIIGGYDKRLCWFDMDLSTKPYKTLRHHKRAIRQVTYHKQYPLFASSSDDGTVIISHGKVFSDLMQNPLIVPLKILRGHQVTNDLGVVDCQFHPHQPWVFSAGADKTIRLFT 2408
D+SDEEDIRNTVGN+P+EWY D+ H+GYDLDG +I K + D+LD FL KM+DPDYWRTV+D + D++LTDE++ +++R++ GQ+ D F+PYEP VD F+ + MIHP+ + P+ KRSF PS+ E +KV ++V AI+ GWI+P+ D P +Y +W ++D PN H M APKL LPGH ESYNPPPEYL +EEE+ AWE +P +R ++L +KF +LR VP Y FIQERFERCLDLYLCPRQRK+R+N++PEDLIPKLPRP+DLQPFPT + + Y+GH+D+VRC+SV P GQWL SGS D ++R WEV T RC++T+ V G V S+ WNP + ++ AAV+ + ++NP LGD+L+ + D ++ + + A W + ++++ ++G RL+I H KPV QVTWHG+GDY+A V+ V IHQLS+ +SQ PF++S GQ+Q V FHP RPF VA+QR +R+Y+L +QELTKKL+ KW+S L +HP GDN+I G YD +L WFD+DLSTKPY+ LRHHK+A+R V +H +YPLFAS SDDG+VI+ HG V++DL+QNPL+VP+K+L+GH +T DLGV+D FHP QPWVFS+GAD T+RLFT
Sbjct: 125 DSSDEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDPMTGRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRPADKRSFIPSLVEKEKVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQED-PNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPSPAVCLVAAAVEDSVLLLNPALGDRLVAGSTDQLLSAFVPPEEPPLQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRRRSQSPFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHLLRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLFT 746 The following BLAST results are available for this feature:
BLAST of TCONS_00021329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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