TCONS_00021344-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021344-protein
Unique NameTCONS_00021344-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1089

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021344-protein ID=TCONS_00021344-protein|Name=TCONS_00021344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1089bp
MGLYSWGDDSCGQLALQRDSHQNLMNDVDLDDNNRTTPTQTQFDISQRAW
KVACGWAHTIIITEDKKAFSCGSNEFGQLGRLGDENTIAQIPYLDSEHVV
SAACGSSHTLLLSEKGQVFSFGSNINGQLGVGSENESYVKPLLVEKISIN
HEVTLISCGKDHCLALCSDGQLYGWGNNEFGQLGFGKKSKKETKPQLITV
LQGCPIVHIATGGFHSFALTVSGLVFAWGKNSYGQLGLGNVEDKCYPTKV
KLSLPQGQSVRYIACGEEHSVLLTSTGNIFTFGCGSSGQLGHNSFSDEHI
PKMVVELGSAITNISCGRKHTLCYSITNGSLYAFGLNVKGQLGLGHFNKQ
NSPMKIKSFWRTFSKTDFINISSTVGQKDDVYFTELEHFFENISQKDVEI
GSANTFDNTFMEVIAGGLNTFIVTCPLIEKPRLPTLNHLIERSCLCHLTK
QKANQMVERWQTTNATFDEKSRIRRYLAIAFSNQSTLNASFLAQNCTSTS
RSEHGLHPMGIHVSLEKLWQVTELLEVVKTSVSSSLISSLHNNPADLECL
RVYIIIPEILHKMAPEEMAPLGVSFAVAFGGLQLPAKKALIGWWKLLPAT
FLERIVQCFKWSILELFPTERRAPFIQNTLASFDACLKVLKVIHELSEEG
DEVLSHASFYIPGLMDKIDIRKDFLSYIENPDGFAFSNFPFVFEVKEKAF
MMEYDAELQMRFMVGRAHMMNLNSIASSGFIDFPQSPYLVLSIRRHHLVQ
DTLNNILSQNLMDFKKPLKIKFVDEMAEDAGGVKKEFFLLLMRDLLDPKY
GMFDFFTETGCIWFKYGSFEGPEMFMLIGVICGLAIYNSIIVDVPFPVCL
YKKILGRKTALDDYRYIDPGIYRGLQDMLDYTESDFGDIYDMNFQVMESI
YGESQVIDLKAGGKDILVTQENKEEYVDLFLQHKLHKSVSREFEAFKDGF
LKVCDGKALHFLHPQELMELVVGSQEYDFNELEKVAEYQGEYYRRHPIIE
NFWKVFHELTFPLKKKFLAFLTGTSKVSVLGMKHMKFIIQPVSGGEDGSH
LPVAHTCFNLLDLPRYPDLDTMRKKLHQAIENSEGFGII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011955XLOC_011955Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021344TCONS_00021344Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR000569HECT_dom
IPR009091RCC1/BLIP-II
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 2..18
score: 28.43
coord: 116..132
score: 32.35
coord: 156..172
score: 40.2
coord: 266..284
score: 31.58
coord: 172..186
score: 47.78
coord: 324..345
score: 32.58
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 115..166
e-value: 5.4E-11
score: 42.8
coord: 169..219
e-value: 5.2E-15
score: 55.7
coord: 3..62
e-value: 5.4E-7
score: 30.0
coord: 328..360
e-value: 2.0E-6
score: 28.2
coord: 69..112
e-value: 1.6E-7
score: 31.7
coord: 222..273
e-value: 7.9E-15
score: 55.1
coord: 277..323
e-value: 1.3E-9
score: 38.4
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 102..112
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 209..219
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 263..273
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 223..276
score: 16.856
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 1..65
score: 11.268
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 66..115
score: 12.012
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 116..169
score: 15.489
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 170..222
score: 17.539
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 329..386
score: 9.137
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 277..327
score: 14.625
IPR000569HECT domainSMARTSM00119hect_3coord: 758..1089
e-value: 6.7E-103
score: 357.8
IPR000569HECT domainPFAMPF00632HECTcoord: 790..1088
e-value: 8.0E-81
score: 271.8
IPR000569HECT domainPROSITEPS50237HECTcoord: 760..1089
score: 84.919
IPR000569HECT domainCDDcd00078HECTccoord: 739..1087
e-value: 6.5813E-124
score: 384.994
IPR000569HECT domainSUPERFAMILY56204Hect, E3 ligase catalytic domaincoord: 733..1083
NoneNo IPR availableGENE3D3.90.1750.10coord: 735..891
e-value: 1.9E-37
score: 127.7
NoneNo IPR availableGENE3D2.130.10.30coord: 2..193
e-value: 4.7E-57
score: 193.0
coord: 194..426
e-value: 6.3E-54
score: 182.6
NoneNo IPR availableGENE3D3.30.2410.10coord: 973..1089
e-value: 2.1E-33
score: 114.5
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 2..360

Blast
BLAST of TCONS_00021344-protein vs. Swiss-Prot (Human)
Match: HERC4 (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 409/1118 (36.58%), Postives = 629/1118 (56.26%), Query Frame = 0
Query:    3 LYSWGDDSCGQLALQRDSHQNLMNDVDLDDNNRTTPTQTQFDISQRAWKVACGWAHTIIITEDKKAFSCGSNEFGQLGRLGDENTIAQIPYLDSEHVVSAACGSSHTLLLSEKGQVFSFGSNINGQLGVGSENESYVKPLLVEKISINHEVTLISCGKDHCLALCSDGQLYGWGNNEFGQLGFGKKSKKETKPQLITVLQGCPIVHIATGGFHSFALTVSGLVFAWGKNSYGQLGLGNVEDKCYPTKVKLSLPQGQSVRYIACGEEHSVLLTSTGNIFTFGCGSSGQLGHNSFSDEHIPKMVVEL-GSAITNISCGRKHTLCYSITNGSLYAFGLNVKGQLGLGHFNKQNSPMKIKSFWRTFSKTDFINISSTVGQKDDVYFTELEHFFENISQKDVEIGSANTFDNTFMEVIAGGLNTFIVTCPLIEKPRLPTLNHLIERSCLCHLTKQKANQMVERWQTTNATFDEKSRIRRYLAIAFSNQSTLNASFLAQNCTSTSRSE---HGLHPMGIHVSLEKLWQV--TELLEVVKTSVSSSLISSLHNNPADLECLRVYIIIPEILHKMAPEEMAPLGVSFAVAFGGLQLPAKKALIGWWKLLPATFLERIVQCFKWSILELF--------PTERRAPFIQNTLASFDACLKVLKVIHELSEEGDEVLSHASFYIPGLMDKIDIRKDFLSYIENPD---------------GFAFSNFPFVFEVKEKAFMMEYDAELQMRFMVGRAHMMNLNSIASSGFIDFPQS--PYLVLSIRRHHLVQDTLNNILSQNLMDFKKPLKIKFVDEMAEDAGGVKKEFFLLLMRDLLDPKYGMFDFFTETGCIWFKYGSFEGPEMFMLIGVICGLAIYNSIIVDVPFPVCLYKKILGRKTALDDYRYIDPGIYRGLQDMLDYTESDFGDIYDMNFQVMESIYGESQVIDLKAGGKDILVTQENKEEYVDLFLQHKLHKSVSREFEAFKDGFLKVCDGKALHFLHPQELMELVVGSQEYDFNELEKVAEYQGEYYRRHPIIENFWKVFHELTFPLKKKFLAFLTGTSKVSVLGMKHMKFIIQPVSGGEDGSHLPVAHTCFNLLDLPRYPDLDTMRKKLHQAIENSEGFGII 1089
            +  WG+ S GQL L             +D+     P ++ F I++R   V CG  HT+ + +D   ++CG N+ GQLG         Q+  LD++++V+ +CG +HTL L++KGQV+++G + +GQLG+    E    P  ++ +S + ++  ++CG  H LAL    +++ WG N++GQLG G   KK+T PQL+  L G P + +A GG HSF LT+SG +F WG+N +GQLGL +  D+  P  +K SL + Q + YI CGE+H+  LT  G +FTFG G  GQLGHNS S E  P+ V EL GS +T I+CGR+HT  +  ++G +Y+FGL   GQLG G  + + SP  +K  W  ++     +I S             E +F     K +  G   +F +       G  + F   CP   K ++ T+N  + +  L + + +   ++      T                 FS+   LN SFLA +     R+     G+      +   KL Q    ++ + V  S+  +LI  L ++  D+E LR Y+ +PE            + + F  A   L+    K L  WW +L      +IV+ FK  ++ L         P+ERR   I N+       LKVL+++H ++E+  +++ +  FYI  + + IDIR D++++++                        +PFVF+ + K  +++ DA LQM+  + +AH  N++S+    F+   +S  P L+L +RR ++V D +  +     +D+KKPLK+ FV E A DAGGV+KEFFLL+MR+LLDPKYGMF ++ ++  IWF   +FE  ++F LIGVICGLAIYN  IVD+ FP+ LYKK+L +K +LDD + + P + R +Q +LDY E D  + + +NF +    +G ++V +L   G D  V ++N++E+VD ++ +  +KSV+  F+AF  GF KVC GK L    P EL  +V+G+  YD+ ELEK  EY+GEY+  HP I+ FW+VFHEL    KK+FL FLTG+ ++ +LGMK +K +IQ   GGE+  +LPV+HTCFNLLDLP+Y + +T+R KL QAI+++EGF +I
Sbjct:    1 MLCWGNASFGQLGLG-----------GIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLS-DIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLK-SL-RSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDS-------------EEYF---CVKRIFSGGDQSFSHYSSPQNCGPPDDF--RCPNPTK-QIWTVNEALIQKWLSYPSGRFPVEIANEIDGT-----------------FSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERR---IFNSF--LHTALKVLEILHRVNEKMGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSL----FLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGEE--YLPVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSLI 1057          
The following BLAST results are available for this feature:
BLAST of TCONS_00021344-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HERC40.000e+036.58Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
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