TCONS_00022025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022025-protein
Unique NameTCONS_00022025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022025-protein ID=TCONS_00022025-protein|Name=TCONS_00022025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MSNFSGALQITDLNDFITPSQECIKPVQIDKNNAPKTDKGRAAIKIEADG
YYQIDEDTGSQIRLKKAEITLNDCLACSGCITSAETVLVNQQSKDELYRI
MSENEAKPESEKVHFVASISPQSLASIASKFDFTMDECMGKLTTFFKQLG
FVEVFHTNLARSLSLIEMQEEFIKRYQSPVKTSFPMLTSACPGWICYAEK
THGNFILPYISKVKSPQAVMGTLVKSKMSQKYGVTPERIYHMTVMPCFDK
KLEASREDFYNDVYQSRDVDLVITSLEIEGMLQEKKIYLKNVGQTSLSSD
LSLLDGDGSLVSHIGSSSGGYLEHVFRHTSQSLFGKESREPLEYKMLRNK
DFQEVSLMVDGEEKLKFAFAYGFRNIQNIVQKIKRKKCQYHFVEIMACPS
GCVNGGGQMRAETKEEAKSLLERTEELYQEMAKEDPRDSEMTRDIREHIH
EFKMVDNKDSLLYTEYHEVKKNVTALNIKW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012371XLOC_012371Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022025TCONS_00022025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004108Fe_hydrogenase_lsu_C
IPR009016Fe_hydrogenase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 410..434
NoneNo IPR availableGENE3D3.40.50.1780coord: 180..318
e-value: 2.1E-47
score: 161.0
coord: 60..179
e-value: 1.3E-26
score: 93.1
NoneNo IPR availableGENE3D3.40.950.10coord: 319..400
e-value: 1.6E-21
score: 76.5
IPR004108Iron hydrogenase, large subunit, C-terminalPFAMPF02906Fe_hyd_lg_Ccoord: 114..406
e-value: 1.9E-74
score: 250.3
IPR009016Iron hydrogenaseSUPERFAMILY53920Fe-only hydrogenasecoord: 73..85
coord: 113..467

Blast
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BLAST of TCONS_00022025-protein vs. Swiss-Prot (Human)
Match: NARFL (Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 8.849e-176
Identity = 246/482 (51.04%), Postives = 341/482 (70.75%), Query Frame = 0 
Query:    2 SNFSGALQITDLNDFITPSQECIKPVQIDKNNAPKTDKGRAAIKIEADG-YYQIDEDTGSQIRLKKAEITLNDCLACSGCITSAETVLVNQQSKDELYRIMSENEAKPESEKVHFVASISPQSLASIASKFDFTMDECMGKLTTFFKQLGFVEVFHTNLARSLSLIEMQEEFIKRY--QSPVKTSFPMLTSACPGWICYAEKTHGNFILPYISKVKSPQAVMGTLVKSKMSQKYGVTPERIYHMTVMPCFDKKLEASREDFYNDVYQSRDVDLVITSLEIEGMLQEKKIYLKNVGQTSLSSDLSLLDGDGSLVSHIGSSSGGYLEHVFRHTSQSLFGKESREPLEYKMLRNKDFQEVSLMVDGEEKLKFAFAYGFRNIQNIVQKIKRKKCQYHFVEIMACPSGCVNGGGQMRAETKEEAKSLLERTEELYQEMAKEDPRDSEMTRDIREHIHEFKMVDNKDSLLYTEYHEVKKNVTALNIKW 480
            S FSGALQ+TDL+DFI PSQECIKPV+++K    +   G A I+IE DG Y+QI++D G++ RL+KA+++LNDCLACSGCITSAETVL+ QQS +EL +++  N+    S++   V S+SPQS AS+A++F     +   KLT+FFK++G   VF T  +R  SL+E Q EF++R+  Q+  + + P+L SACPGWICYAEKTHG+FILP+IS  +SPQ VMG+LVK   +Q+  +TP++IYH+TVMPC+DKKLEASR DF+N  +Q+RDVD V+T+ E+  +L+E+ + L ++    L S  S    +    SH G  SGGYLEHVFRH ++ LFG    E + YK LRNKDFQEV+L  +G+  L FA AYGFRNIQN+VQ++KR +C YH+VE+MACPSGC+NGGGQ++A  +  ++ LL+  E LY  +  E P D+   +++  H  +    +    LL+T+YH V+K  T L I+W
Sbjct:    3 SPFSGALQLTDLDDFIGPSQECIKPVKVEK----RAGSGVAKIRIEDDGSYFQINQDGGTR-RLEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAE-EPTSHRGGGSGGYLEHVFRHAARELFGIHVAE-VTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDR-PSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
The following BLAST results are available for this feature:
BLAST of TCONS_00022025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NARFL8.849e-17651.04Cytosolic Fe-S cluster assembly factor NARFL OS=Ho... [more]
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