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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022025 ID=TCONS_00022025|Name=TCONS_00022025|organism=Clytia hemisphaerica|type=transcript|length=4402bpRun BLAST on NCBI protein sequence of TCONS_00022025-protein >TCONS_00022025-protein ID=TCONS_00022025-protein|Name=TCONS_00022025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MSNFSGALQITDLNDFITPSQECIKPVQIDKNNAPKTDKGRAAIKIEADGRun BLAST on NCBI transcript from alignment at sc0000403:200346..209877+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022025 ID=TCONS_00022025|Name=TCONS_00022025|organism=Clytia hemisphaerica|type=transcript|length=9532bp|location=Sequence derived from alignment at sc0000403:200346..209877+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000403:200346..209877+ >TCONS_00022025 ID=TCONS_00022025|Name=TCONS_00022025|organism=Clytia hemisphaerica|type=CDS|length=5772bp|location=Sequence derived from alignment at sc0000403:200346..209877+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022025 vs. Swiss-Prot (Human)
Match: NARFL (Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1) HSP 1 Score: 498.049 bits (1281), Expect = 5.673e-161 Identity = 244/482 (50.62%), Postives = 340/482 (70.54%), Query Frame = 1
Query: 1957 SNFSGALQITDLNDFITPSQECIKPVQIDKNNAPKTDKGRAAIKIEADG-YYQIDEDTGSQIRLKKAEITLNDCLACSGCITSAETVLVNQQSKDELYRIMSENEAKPESEKVHFVASISPQSLASIASKFDFTMDECMGKLTTFFKQLGFVEVFHTNLARSLSLIEMQEEFIKRY--QSPVKTSFPMLTSACPGWICYAEKTHGNFILPYISKVKSPQAVMGTLVKSKMSQKYGVTPERIYHMTVMPCFDKKLEASREDFYNDVYQSRDVDLVITSLEIEGMLQEKKIYLKNVGQTXXXXXXXXXXXXXXXVSHIGSSSGGYLEHVFRHTSQSLFGKESREPLEYKMLRNKDFQEVSLMVDGEEKLKFAFAYGFRNIQNIVQKIKRKKCQYHFVEIMACPSGCVNGGGQMRAETKEEAKSLLERTEELYQEMAKEDPRDSEMTRDIREHIHEFKMVDNKDSLLYTEYHEVKKNVTALNIKW 3393
S FSGALQ+TDL+DFI PSQECIKPV+++K + G A I+IE DG Y+QI++D G++ RL+KA+++LNDCLACSGCITSAETVL+ QQS +EL +++ N+ S++ V S+SPQS AS+A++F + KLT+FFK++G VF T +R SL+E Q EF++R+ Q+ + + P+L SACPGWICYAEKTHG+FILP+IS +SPQ VMG+LVK +Q+ +TP++IYH+TVMPC+DKKLEASR DF+N +Q+RDVD V+T+ E+ +L+E+ + L ++ + + L SH G SGGYLEHVFRH ++ LFG E + YK LRNKDFQEV+L +G+ L FA AYGFRNIQN+VQ++KR +C YH+VE+MACPSGC+NGGGQ++A + ++ LL+ E LY + E P D+ +++ H + + LL+T+YH V+K T L I+W
Sbjct: 3 SPFSGALQLTDLDDFIGPSQECIKPVKVEK----RAGSGVAKIRIEDDGSYFQINQDGGTR-RLEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDL-EPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAE-VTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDR-PSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476 The following BLAST results are available for this feature:
BLAST of TCONS_00022025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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