TCONS_00022214-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022214-protein
Unique NameTCONS_00022214-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022214-protein ID=TCONS_00022214-protein|Name=TCONS_00022214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MALMDPNILSVLNGLLYQETGTTITPSNGLHPALDTTASFQPTNDDLNTW
LCNNTEALKGQSNAWTTQDEHETNSKKARLYNSTTQNSSNQLITNSTTTT
AARKMNVPDELTATEYLNQLLQDKTTVSKMPKIFLHSERLLDEEISRVRN
DIFCPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTL
RQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDT
EDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPNSE
ASPPAAATVTQNGVSPTGLLSFPSPSPVVPQNNTSFPAIRNSAGQLKAHI
AKVRRMYHPYKQATS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012455XLOC_012455Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022214TCONS_00022214Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR032377STAR_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 170..266
e-value: 3.3E-4
score: 30.0
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 166..300
e-value: 4.7E-22
score: 77.7
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 172..296
IPR032377STAR protein, homodimerisation regionPFAMPF16544STAR_dimercoord: 114..153
e-value: 1.6E-15
score: 56.3
NoneNo IPR availableCDDcd02395SF1_like-KHcoord: 173..295
e-value: 1.35532E-51
score: 168.576

Blast
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BLAST of TCONS_00022214-protein vs. Swiss-Prot (Human)
Match: QKI (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.286e-72
Identity = 120/225 (53.33%), Postives = 158/225 (70.22%), Query Frame = 0 
Query:  115 EYLNQLLQDKTTVSKMPK---IFLHSERLLDEEISRVRNDIF------CPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTLRQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDTEDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPNSEASPPAAATVTQNGVSPTGLLSFPSPSPVVP 330
            +YL QL+ DK  +S +P    IF H ERLLDEEISRVR D++              LP   GP V+L EK+Y  VK++P FNFVGRI+GPRGLT +Q+E ETG K++VRG+GSM+DKK EE+ RG+PN+EHL+EDLHVLI VED ++RA +KLK+AVEEV  LL P  +GED++KK QL +LAILNGTYR  N + SP  A ++     +   +++   P+PV+P
Sbjct:   16 DYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIK-SPALAFSLAATAQAAPRIIT--GPAPVLP 237
The following BLAST results are available for this feature:
BLAST of TCONS_00022214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QKI4.286e-7253.33Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
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