TCONS_00022299-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022299-protein
Unique NameTCONS_00022299-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022299-protein ID=TCONS_00022299-protein|Name=TCONS_00022299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MSSYSTPIKSPSNRSYDSNNGSFSSKLDLSGYNTSPATRPVGRDNKAGWY
NMHEKHESMAKRSNLEYILCGDSIVAGLSRYSDIWRKFFAPLHALNLGIG
GDRTQHVLWRAENLDISPNTKFVVLHCGTNNIDRDTPTCIANGILSIAVT
FQEKVPDLKVVVTGLLPRDLHQSSYRRDKIKKVNKIVKKMCRRDFEGVYY
MKQDDDWVVEDGQLDESLYFTDHLHLIEKGNIKLATSIIDMLDKLKKDGC
VEYSSDEDDDSDSDDANYQYQRLLSQKRKRDVDSDDNDYSHSRSEKRRRQ
SDDHHHRRSSSHRSSSSSKRSRHSYGSSSSRDRHRDENETSSWKKARERG
VSSLKDRGLSSGSGRKKDEDRDSFDKSKDRKLSPVRLNNGTRDRGLAAVS
QQEVANEKDQEFSGTAKSIDITLDQRKRLEARRNKFAAPALLAPSSLMRK
IQDNQKKKDSEKKDSQKHIDLKRKSIKHVSSNKPPIDEKPPTELTEEEIK
TKKFFSDFTADSDSE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012511XLOC_012511Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022299TCONS_00022299Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1110coord: 33..245
e-value: 2.8E-23
score: 82.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..419
IPR013830SGNH hydrolase-type esterase domainPFAMPF13472Lipase_GDSL_2coord: 71..231
e-value: 1.8E-12
score: 47.9
IPR013830SGNH hydrolase-type esterase domainSUPERFAMILY52266SGNH hydrolasecoord: 43..243

Blast
[Close]
BLAST of TCONS_00022299-protein vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.274e-29
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 0 
Query:   35 SPATRPVGRDNKAG---WYNMHEKHESMAKRSNLEYILCGDSIVAGLSRYSDIWRKFFAPLHALNLGIGGDRTQHVLWRAENLDIS-PNTKFVVLHCGTNNIDRDTPTCIANGILSIAVTFQEKVPDLKVVVTGLLPRDLHQSSYRRDKIKKVNKIVKKMCRRDFEGVYYMKQDDDWVVEDGQLDESLYFTDHLHL 226
            +PA++P    +  G   W ++H +  + +K    E +  GDS+V  L    +IWR+ F+PLHALN GIGGD TQHVLWR EN ++     K VV+  GTNN    T   +  GI +I     E+ P  +VVV GLLPR  H +   R+K ++VN++V+          +++  D  +V  DG +     + D+LHL
Sbjct:    6 NPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQ-LMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNN-HGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPL-REKNRQVNELVRA-ALAGHPRAHFLDADPGFVHSDGTISHHDMY-DYLHL 196
The following BLAST results are available for this feature:
BLAST of TCONS_00022299-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PA1B39.274e-2936.73Platelet-activating factor acetylhydrolase IB subu... [more]
back to top