TCONS_00022514-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022514-protein
Unique Name	TCONS_00022514-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1185

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022514-protein ID=TCONS_00022514-protein|Name=TCONS_00022514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1185bp
MERKMLFPSAAAMLDDYSSGTIPSKTGQQSSSILFPSAVSMMGEGSDRTT
PGLVKQQTTSMLSSSDCSKMENECRENSRINSVERSINQGLITKQRNVFG
SERFSSFPVQKFHQQQDKSPESSHSNLSSSESDGSYEEVIIDTKEQKKKK
KKKSNKKRKKKRKRKYDSENSSENSDSETDSDDRDYREKKKRKSSKKKRK
KKTKKTETKPAEAKIPKPNTIWLEDTKLNIEDAYRKDRRPDKENLEYGSL
YKKDIAWFYPSKSQCLGIATDSNSSRRKKKTKKDKNTSLNSKGRYFSKLK
GGVMDKKEDVELNEKVSEDTEFINEVESSVFIPIRGKLDPDYASRSSKNE
TLERQKEFSQQLLEDPSCVKTWIEFIDAQDELSPWLHDLKDQETWLSSRS
LIDKKISITEKALLKNPASTELILKYMHLVKQVWTHEQMKERWKKFVFQF
PNRSILWMEYLQHLQTELVRMTVSQVIDVYRKAFRMLLGIHNGDIKSHKR
EKNSIDGITMLLNQMIIFIWQAGWSEKATSTVHSFIEYNLTKPSAALIND
NKKRDEFQRYFDDTGVRLGEEGYVSWENYMKQQGVHFPDKDVEITISGIG
HQPKTKNVSFKEILKQVKQGLSNEGEDNKPQKNEYWTRLELTRMREECFS
YHGDIEECEDTERVVLFDDLSLVCFSLESEAVVFQIVLTYLLLFGVSIPK
SRYHKNLFKHSCKFLKIIESGSKCFCHSSDFCDFVNIEGTDFKDHLYFLR
TFITHLLKLFKDLTILQTLSTVWFHMESILFRESFEDVSTELDKRYWKEM
RKFLKSLLKLPFNRSFVPIWTMYAMYEWQIGNSEDAEKIYTTAIQLSRLN
DSEPDASNALILRSLINLFISSHHKNVSTERSRILNLFCLFYGPTLKEQL
HLNEQSPTINSLTMFKISRHLSEHFENLLATDFTVWKAFENDFLSIYVTF
VYFYADFGVFTDTLDQILNKYEKSNSGFDYPDPLVYGMLLMREYNELNVG
QFRTYSTYLERCFKMFPGNGVIFKFFMDANKVGVNTLNVRKMFDQCTKDR
QDITPWLNYIGYEQQRLLITSTVGADHQVNFEILESRTSSHHRICSIYQR
LLKTNNFSSCSQLWQDYMSFYLMNKNLKKAKDVMYTSLRNCPASKDLYLF
GMKEVKNFQELYDLMMEKELRVKVITEELEVLLEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012628	XLOC_012628	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022514	TCONS_00022514	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR013633	NRDE-2
IPR011990	TPR-like_helical_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1165..1185
None	No IPR available	COILS	Coil	Coil	coord: 144..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..73
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 1089..1123 e-value: 14.0 score: 14.3 coord: 795..829 e-value: 0.9 score: 18.6 coord: 1034..1065 e-value: 630.0 score: 2.2 coord: 434..466 e-value: 1100.0 score: 0.5
IPR013633	siRNA-mediated silencing protein NRDE-2	PFAM	PF08424	NRDE-2	coord: 354..696 e-value: 3.7E-61 score: 206.9
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 357..871 e-value: 5.0E-8 score: 32.3 coord: 961..1176 e-value: 1.1E-6 score: 28.0
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 410..851

Blast

[Close]

BLAST of TCONS_00022514-protein vs. Swiss-Prot (Human)
Match: NRDE2 (Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 1.269e-79
Identity = 277/1090 (25.41%), Postives = 463/1090 (42.48%), Query Frame = 0

Query:  170 NSSENSDSETDSDDRDYREKKKRKSSKKKRKKKTKKTETKPAEAKIPKPNTIWLEDTKLNIEDAYRKDRRPDKENLEYGSLYKKDIAWFYPSKSQCLGIATDSNSSRRKKKTKKDKNTSLNSKGRYFSKLKGGVMDKKEDVELNEKV----SEDTEFINEVESSVFIPIRGKLDPDYASRSSKNETLERQ-------------------------KEFSQQLLEDPSCVKTWIEFIDAQDEL--SPWLHDLKDQETWLSSRSL---IDKKISITEKALLKNPASTELILKYMHLVKQVWTHEQMKERWKKFVFQFPNRSILWMEYLQHLQTELVRMTVSQVIDVYRKAFRMLLGIHNGDIKSHKREKNSIDGITMLLNQMIIFIWQAGWSEKATSTVHSFIEYNLTKPSAALINDNKKRDEFQRYFDDTG-VRLGEEGYVSWENYMKQQGVHFPDKDVEITISGIGHQPKTKNVSFKEILKQVKQGLSNEGEDNKPQKNEYWTRLELTRMREECFSYHGDI------EECEDTERVVLFDDLSLVCFSLESEAVVFQIVLTYLLLFGV----SIPKSRYHKNLFKHSC-----------KFLKIIESGSKCFCHSSDFCDFVNIEGTDFKDHLYFLRTFITHLLKLFKDLTILQTLSTVWFHMESILFRESFEDVSTELDKRYWKEMRKFLKSLLKLPFNRSFVPIWTMYAMYEWQIGNSEDAEKIYTTAIQLS---RLNDSEPDASNALILRSLINLFISSHHKNVSTERS-RILNLFC--LFYGPTLKEQLHLNEQSPTINSLTMFKISRHLSEHFENLLATDFTVWKAFENDFLSIYVTFVYFYADFGVFTDTLDQILNKYE----KSNSGFDYPDPLVYG-------------------MLLMREYNELNVGQFRTYSTYLERCFKMFPGNGVIFKFFMDANKVGVNTLNVRKMFDQCTKDRQDITPWLNYIGYEQQRLLITSTVGADHQVNFEILESRTSSHHRICSIYQRLLKTNNFSSCSQLWQDYMSFYLMNKNLKKAKDVMYTSLRNCPASKDLYLFGMKEVKN-FQELYDLMMEKELRVK 1173
              S +S SETD+D     EK K        KK++++       A       +WLED +    + +R D++PD  N EY SLY+ DIA +      CLGI          + T  +K  S     RYF+K   G+M+  + V ++ K     SE   FI   +     P+   L+P      S    L+ Q                         +EF++++ E+P   + W+ F+  QDE+  SP L+ +++ E     RSL   ++KK++I E+A+  N +S +L L  + L  + W    + + W+K +F  PN + LW +YL   Q++    ++S++  +Y K    L  + +G I SH     + + +  L  Q   F+ QAG SEKA S   + +++   KP +      K + EF   F D+G  R GE+G   W+ +M QQ     ++   + I+              +      +    E +D    + + W   E +R +     +  D       E+CED ER VLFDD+      L S  + FQ+V  +L   GV    + P S  +  + ++S             F   + SG+ C     D   +        ++   F+R     ++ LF      Q L   W   E           + +  K   K  +K  K+LLK P N +   +W  YA  EW +GN+EDA K++ TA+ ++    L DS  D     +L + + + +S   +  +T R+  IL        YGP   + L ++          + K +R   EH       D  V      D  S  ++    +  F   T  +D  +  YE    K NS   +P+    G                     L+R + +++V         L +  K++PGN V+++ ++       +    R+ FD  T+  + + PWL  I  E+ R  +  TV              T   HRI ++++  +++++ S C  LW+ Y++F +   N +++K V Y +L+NCP +K LYL  ++   +  QE+ DLM EKELRV+
Sbjct:  103 GPSSSSRSETDTDS----EKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGI-NPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNI-DGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQ-----ERGGWVVIN-------------PDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGR-MDRLGYPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQ-LCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDS--DLCELSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVH----------ILK-ARKAYEHALQDCLGDSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSV-FPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVR 1152

The following BLAST results are available for this feature:

BLAST of TCONS_00022514-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NRDE2	1.269e-79	25.41	Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=...	[more]

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TCONS_00022514-protein (polypeptide) - C. hemisphaerica