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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022514 ID=TCONS_00022514|Name=TCONS_00022514|organism=Clytia hemisphaerica|type=transcript|length=3932bpRun BLAST on NCBI protein sequence of TCONS_00022514-protein >TCONS_00022514-protein ID=TCONS_00022514-protein|Name=TCONS_00022514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1185bp MERKMLFPSAAAMLDDYSSGTIPSKTGQQSSSILFPSAVSMMGEGSDRTTRun BLAST on NCBI transcript from alignment at sc0000424:205360..220647+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022514 ID=TCONS_00022514|Name=TCONS_00022514|organism=Clytia hemisphaerica|type=transcript|length=15288bp|location=Sequence derived from alignment at sc0000424:205360..220647+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000424:205360..220647+ >TCONS_00022514 ID=TCONS_00022514|Name=TCONS_00022514|organism=Clytia hemisphaerica|type=CDS|length=35580bp|location=Sequence derived from alignment at sc0000424:205360..220647+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022514 vs. Swiss-Prot (Human)
Match: NRDE2 (Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3) HSP 1 Score: 274.248 bits (700), Expect = 1.411e-75 Identity = 259/1039 (24.93%), Postives = 447/1039 (43.02%), Query Frame = 3
Query: 696 IWLEDTKLNIEDAYRKDRRPDKENLEYGSLYKKDIAWFYPSKSQCLGIAXXXXXXXXXXXXXXXXXXXXXXXGRYFSKLKGGVMDKKEDVELNEKV----SEDTEFI--NEVESSVFI-----------------------PIRGKLDPDYASRSSKNETLERQKEFSQQLLEDPSCVKTWIEFIDAQDEL--SPWLHDLKDQETWLSSRSL---IDKKISITEKALLKNPASTELILKYMHLVKQVWTHEQMKERWKKFVFQFPNRSILWMEYLQHLQTELVRMTVSQVIDVYRKAFRMLLGIHNGDIKSHKREKNSIDGITMLLNQMIIFIWQAGWSEKATSTVHSFIEYNLTKPSAALINDNKKRDEFQRYFDDTG-VRLGEEGYVSWENYMKQQGVHFPDKDVEITISGIGHQPKTKNVSFKEILKQVKQGLSNEGEDNKPQKNEYWTRLELTRMREECFSYHGDI------EECEDTERVVLFDDLSLVCFSLESEAVVFQIVLTYLLLFGV----SIPKSRYHKNLFKHSC-----------KFLKIIESGSKCFCHSSDFCDFVNIEGTDFKDHLYFLRTFITHLLKLFKDLTILQTLSTVWFHMESILFRESFEDVSTELDKRYWKEMRKFLKSLLKLPFNRSFVPIWTMYAMYEWQIGNSEDAEKIYTTAIQLS---RLNDSEPDASNALILRSLINLFISSHHKNVSTERS-RILNLFC--LFYGPTLKEQLHLNEQSPTINSLTMFKISRHLSEHFENLLATDFTVWKAFENDFLSIYVTFVYFYADFGVFTDTLDQILNKYE----KSNSGFDYPDPLVYG-------------------MLLMREYNELNVGQFRTYSTYLERCFKMFPGNGVIFKFFMDANKVGVNTLNVRKMFDQCTKDRQDITPWLNYIGYEQQRLLITSTVGADHQVNFEILESRTSSHHRICSIYQRLLKTNNFSSCSQLWQDYMSFYLMNKNLKKAKDVMYTSLRNCPASKDLYLFGMKEVKN-FQELYDLMMEKELRVK 3554
+WLED + + +R D++PD N EY SLY+ DIA + CLGI + + + K++ + RYF+K G+M+ + V ++ K SE FI ++E + + P + PD S + +EF++++ E+P + W+ F+ QDE+ SP L+ +++ E RSL ++KK++I E+A+ N +S +L L + L + W + + W+K +F PN + LW +YL Q++ ++S++ +Y K L + +G I SH + + + L Q F+ QAG SEKA S + +++ KP + K + EF F D+G R GE+G W+ +M QQ ++ + I+ + + E +D + + W E +R + + D E+CED ER VLFDD+ L S + FQ+V +L GV + P S + + ++S F + SG+ C D + ++ F+R ++ LF Q L W E + + K K +K K+LLK P N + +W YA EW +GN+EDA K++ TA+ ++ L DS D +L + + + +S + +T R+ IL YGP + L ++ + K + ++ L D V D S ++ + F T +D + YE K NS +P+ G L+R + +++V L + K++PGN V+++ ++ + R+ FD T+ + + PWL I E+ R + TV T HRI ++++ +++++ S C LW+ Y++F + N +++K V Y +L+NCP +K LYL ++ + QE+ DLM EKELRV+
Sbjct: 150 VWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVE-RYFTKKSVGLMN-IDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQ-----ERGGWVVIN-------------PDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGR-MDRLGYPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQ-LCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDS--DLCELSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVH----------ILKARKAYEHALQDCLG-DSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSV-FPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVR 1152 The following BLAST results are available for this feature:
BLAST of TCONS_00022514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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