TCONS_00022644-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022644-protein
Unique Name	TCONS_00022644-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	938

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022644-protein ID=TCONS_00022644-protein|Name=TCONS_00022644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=938bp
MALSASAQTFFPKNDSKSENKPKEKAPLKSSLSVDVPEFVPNTEKNIQPK
EGNREVNKNIIKKQISKKDSNRIANRNDGNEKKTQNQRNILEKQSFNPRH
DINWAQSKDIKEMSDLFSARHDKNWFNHIPAKSKQKDSLRKSDSVNVYAS
ENKDNHHKELLQTYSIGVSAQSKKRVQNKKSATGDDLNNIPSTSWSSIVK
TAPQKKTQSLDRRSSLTPNTGHSQDFRTKTYDVERDKRNKLNKLKKTNSL
LGALGDPVITNPSVKAKSLPKRLTHTHLTESRSVGSNDIALRQARPRLEI
KRKSLVLKAKKSAGLKQNPEMDNWFTQDVPAKIELFSTLTKLSPDDEKPP
ESPKPSTTPTEKRKLTRTTKKVFSPSLKVTDFTDKIVSTKHDITDDYFSN
DKYKNLPKQDTTKDTLELSIKKPLGNDFNRPAVVSYSAMLKKNSAGPPVT
SKPPEKEEKLLTSEEIRLMKKAKKKEKKKMKKQKRIAESQSQQDKGNHDD
GAAVQDKTKNKSKQNMTIDISDMVDKLFLAAPKTKSNKSSRSKSKPKKVT
VSTGVVSVVSGLAKKNKHDGKRTTRNKYGGTGIIMDGATAIVKRGKERET
PKRKKPTLLKKIIQAERERKRQILLKATKENEANEEEQKNVDDDKDDDSE
EKASKGTEKERVNNNNANSGKSPSEEKENTNKETSIIEVISTETKEIKCC
APLTKLPEEYWKQLHSRKFREYCDHMATKEINDLTYQLLTTLLRFQDRVY
HENPTKFRQKRRFVLGLREVLKHTKLRRIKAVIVAPNLEKISSEGGLDDY
LRSILLLCDQDEIPKIFAMSRHGLGKTLKKKAPVSVIGIFNYDGAQDTYK
ELINHVENAKKLYSDKVHAILTQKNTSKTASQKQTKPKDVGINISSNSSP
SQSSESNHRSHQSPRLQNNHHNEVEMLSHQILTKLSEP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012714	XLOC_012714	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022644	TCONS_00022644	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029064	L30e-like
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 842..862
None	No IPR available	COILS	Coil	Coil	coord: 470..493
None	No IPR available	COILS	Coil	Coil	coord: 617..637
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 874..921
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 531..610
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 625..684
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..518
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 746..870 e-value: 7.6E-16 score: 57.4
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 721..858
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 756..847 e-value: 2.6E-11 score: 43.0

Blast

[Close]

BLAST of TCONS_00022644-protein vs. Swiss-Prot (Human)
Match: SBP2L (Selenocysteine insertion sequence-binding protein 2-like OS=Homo sapiens GN=SECISBP2L PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 5.282e-50
Identity = 120/369 (32.52%), Postives = 200/369 (54.20%), Query Frame = 0

Query:  503 AVQDKTKNKSKQNMTIDISDMVDKLFLAAPKTKSNKSSRSKSKPKKVTVSTGVVSVVSGLAKKNKHDGKRTTRNKYGGTGI-IMDGATAIVKRGKERETPKRKKPTLLKKIIQAERERKRQILLKATKENEANEEEQKNVDDDKDDDSEEKASKGTEKERVNNNNANSGKSPSEEKENTNKETSIIEVISTETKEIKCCAPLTKLPEEYWKQLHSRKFREYCDHMATKEINDLTYQLLTTLLRFQDRVYHENPTKFRQKRRFVLGLREVLKHTKLRRIKAVIVAPNLEKISSEGGLDDYLRSILLLCDQDEIPKIFAMSRHGLGKTLKKKAPVSVIGIFNYDGAQDTYKELINHVENAKKLYSDKVHAI 870
            A+      K+K  + +D+ DM+  L       K  ++ +++       +S  VV+  S    K+  + K  T+++   T    +D A++  K+GKE+E  K K+PT LKK+I  ERE K+  L      N    EE   +  D  DD  ++    ++++   +  +++  SP+ +    N    +  V           +P+         ++HS++FREYC+ +  KEI++    LL  L+ FQ+R+Y ++P + + +RR V+GLREV KH KL +IK VI++PN EKI S+GGLD+ L +++ +  + EIP +FA+ R  LG+ + K  PVSV+GIFNY GA+  + +L+   E A+K Y D V A+
Sbjct:  475 ALSKAAGKKNKTPVQLDLGDMLAAL------EKQQQAMKARQITNTRPLSYTVVTAAS-FHTKDSTNRKPLTKSQPCLTSFNSVDIASSKAKKGKEKEIAKLKRPTALKKVILKEREEKKGRL--TVDHNLLGSEEPTEMHLDFIDDLPQEIV--SQEDTGLSMPSDTSLSPASQ----NSPYCMTPVSQGSPASSGIGSPMAS---STITKIHSKRFREYCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNKLVELTEEARKAYKDMVAAM 825

The following BLAST results are available for this feature:

BLAST of TCONS_00022644-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SBP2L	5.282e-50	32.52	Selenocysteine insertion sequence-binding protein ...	[more]

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TCONS_00022644-protein (polypeptide) - C. hemisphaerica