Paraxis (polypeptide) - C. hemisphaerica

Overview
NameParaxis
Unique NameTCONS_00022936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022936-protein ID=TCONS_00022936-protein|Name=Paraxis|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MIISESLRASMHRPSSPSYDLDTGTGTLLEEGGGGTSSWLNLPQREDDAP
MSPVILPPHLSNSLSSVNSSKSDTDQRYQPQYDSNSDAASDMGRTPGIEM
MLQYNDLNREVFENLSSNNTVTNNNNRYNEYSKRLYDNFYRYNQTAANSS
FSNGAYTYPRPSSLCGASYPQQYTPSPYHNGYTDVNNSYDSMSSFNNNPI
NVTNSAKKRKMSPTTHPRVRKTSTVRERTRTHNVNDGFVTLRNLIPTDPP
DRKLSKIETLRLASSYIWHLNSILLNSPQQTEAIHSHGTDLCYITCCMGT
DRICTFCVSFLKSIGSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012891XLOC_012891Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022936TCONS_00022936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 224..276
e-value: 2.3E-15
score: 67.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 220..270
e-value: 6.0E-15
score: 54.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 202..284
e-value: 2.9E-15
score: 55.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 218..270
score: 15.897
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 220..270
e-value: 1.46084E-16
score: 71.4763
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 216..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..227

Blast
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BLAST of Paraxis vs. Swiss-Prot (Human)
Match: TCF15 (Transcription factor 15 OS=Homo sapiens GN=TCF15 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.128e-18
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:  220 RKTSTVRERTRTHNVNDGFVTLRNLIPTDPPDRKLSKIETLRLASSYIWHLNSILL---NSPQQTEAIHSHGTDLCYITCCMGTDR----ICTFCVS 309
            R+ +  RER RT +VN  F  LR LIPT+P DRKLSKIET+RLASSYI HL ++LL   ++        + G+    +       R    ICTFC+S
Sbjct:   74 RQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLS 170
The following BLAST results are available for this feature:
BLAST of Paraxis vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCF156.128e-1845.36Transcription factor 15 OS=Homo sapiens GN=TCF15 P... [more]
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