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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022936 ID=TCONS_00022936|Name=TCONS_00022936|organism=Clytia hemisphaerica|type=transcript|length=1949bp
ATCCATCTTTtgtcaaaattacaaaacttaACAGTTCATAGTTTTTGTGA
AGTTAATATTTCGAAGTAAAAATTCATCAACTTTgtgaatataaaaataa
aacttgaaaactaaatttggtaaaaaaaatccCCATAAATAATGTACATG
AAACCTCTTACATTTTTActaaattatgtttttttttcgacactCTAGAA
ATTGAAATCAATCTCGCTTACAGGATCATCAACTACTTAAGTCAGATAAC
CACGGATTTTGCCTGTTGGAATAAGTTTGGATAAAAAATTGTTAGATGTT
AGATCCCGCTGCTTAAAACGCAtacttgatattcatgacgtaatctttta
tacgaaAAACACACGAAAAGCACTgggcgtttgccaccagtttcaatgtt
taaattcaaaactagTGGCAAACGCCTGGTGTTTCCGTATAGaaaattac
gtcataaatatcaaGAATTCTTGTAGAAGCCTATTGAGACTCACGAACTC
GATCCCAGTCCCTTAATTCGCTTATGATTTTGATAGGAAAGTTTAAGATt
cagcaaaatcaaaaagttgtgTGGCTCTGGGTACAAGATTGCTTTTGAGA
GTCTCATTTCTCGGAAAATACCATTTCATTCTACGAAAACTAAAGTATTA
AACAATGATTTGAATATTCAAATGCTGAAATCACAAACTTCCAATCGATT
TAAGGAAAGAGACGCAAAAAGTACAAATACGGTCAGTTCCCATACAGCAC
GTGATGTAACATAAATCGGTGCCGTGAGAATGTATCGCCTCAGTCTGTTG
AGGTGAATTCAACAAAATAGAGTTCAAATGCCAAATGTAGCTTGAAGCTA
GCCTCAAGGTCTCGATTTTCGAAAGTTTCCGATCTGGTGGATCAGTTGGG
ATCAAATTACGTAAGGTTACAAATCCATCGTTTACGTTATGCGTTCGCGT
ACGTTCACGTACGGTTGACGTTTTACGTACACGTGGATGTGTAGTAGGGC
TCATTTTTCGTTTCTTGGCTGAGTTTGTAACATTTATTGGGTTATTATTA
AATGAAGACATCGAATCGTAAGAATTGTTAACGTCTGTATAACCATTATG
ATACGGTGACGGAGTGTATTGTTGTGGGTAGCTCGCGCCGCACAAACTTG
ACGGGCGTGGATAAGTATACGCCCCGTTACTAAAAGAAGAGTTTGCTGCT
GTTTGGTTATACCGGTAAAAATTATCGTACAGTCGTTTAGAATATTCATT
ATATCTATTGTTATTGTTGGTGACAGTGTTGTTGGATGAAAGATTCTCAA
ATACTTCGCGATTCAAGTCATTATATTGCAGCATCATCTCAATTCCAGGT
GTTCTGCCCATATCTGATGCCGCATCGCTATTTGAATCATATTGTGGTTG
ATATCTTTGATCGGTGTCTGACTTGCTTGAATTGACACTGGATAAAGAGT
TTGAAAGATGCGGTGGCAAGATGACGGGTGACATAGGGGCATCATCCTCC
CGTTGAGGGAGATTCAACCATGAGGACGTACCCCCTCCTCCTTCCTCAAG
TAAAGTTCCTGTTCCAGTGTCTAAATCATAAGATGGTGAAGATGGTCGAT
GCATTGATGCTCTCAAGCTCTCGCTGATAATCATAATGTTATTAAAATTA
ATCTGTTACTTTCACaagacaattttttgatttttataccACACCTtaca
ccttttttttcaattttgacaatTATTTGTGTGAGATTGGtgtgttttta
aaatcaatttccaTAAAGGTCACTTCTACTTGCTGTTGGTGTTGATTGAA
ATCGAATCTGGAATCTCCATCAATATATCTCCTTTTTATATAACTTGAAT
GctcttttgttttgtgttttaatTCAACAATACAATCATCTATTCAGCTC
TGCTTGCCCTATAAAATACGAGAACCAGTATCAAAATCAACTATTTCCT Run BLAST on NCBI protein sequence of Paraxis >TCONS_00022936-protein ID=TCONS_00022936-protein|Name=Paraxis|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MIISESLRASMHRPSSPSYDLDTGTGTLLEEGGGGTSSWLNLPQREDDAP
MSPVILPPHLSNSLSSVNSSKSDTDQRYQPQYDSNSDAASDMGRTPGIEM
MLQYNDLNREVFENLSSNNTVTNNNNRYNEYSKRLYDNFYRYNQTAANSS
FSNGAYTYPRPSSLCGASYPQQYTPSPYHNGYTDVNNSYDSMSSFNNNPI
NVTNSAKKRKMSPTTHPRVRKTSTVRERTRTHNVNDGFVTLRNLIPTDPP
DRKLSKIETLRLASSYIWHLNSILLNSPQQTEAIHSHGTDLCYITCCMGT
DRICTFCVSFLKSIGSL Run BLAST on NCBI transcript from alignment at sc0000436:48207..50155 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022936 ID=TCONS_00022936|Name=TCONS_00022936|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at sc0000436:48207..50155 (Clytia hemisphaerica)
AGGAAATAGTTGATTTTGATACTGGTTCTCGTATTTTATAGGGCAAGCAG
AGCTGAATAGATGATTGTATTGTTGAattaaaacacaaaacaaaagagCA
TTCAAGTTATATAAAAAGGAGATATATTGATGGAGATTCCAGATTCGATT
TCAATCAACACCAACAGCAAGTAGAAGTGACCTTTAtggaaattgatttt
aaaaacacaCCAATCTCACACAAATAattgtcaaaattgaaaaaaaaggt
gtaAGGTGTggtataaaaatcaaaaaattgtcttGTGAAAGTAACAGATT
AATTTTAATAACATTATGATTATCAGCGAGAGCTTGAGAGCATCAATGCA
TCGACCATCTTCACCATCTTATGATTTAGACACTGGAACAGGAACTTTAC
TTGAGGAAGGAGGAGGGGGTACGTCCTCATGGTTGAATCTCCCTCAACGG
GAGGATGATGCCCCTATGTCACCCGTCATCTTGCCACCGCATCTTTCAAA
CTCTTTATCCAGTGTCAATTCAAGCAAGTCAGACACCGATCAAAGATATC
AACCACAATATGATTCAAATAGCGATGCGGCATCAGATATGGGCAGAACA
CCTGGAATTGAGATGATGCTGCAATATAATGACTTGAATCGCGAAGTATT
TGAGAATCTTTCATCCAACAACACTGTCACCAACAATAACAATAGATATA
ATGAATATTCTAAACGACTGTACGATAATTTTTACCGGTATAACCAAACA
GCAGCAAACTCTTCTTTTAGTAACGGGGCGTATACTTATCCACGCCCGTC
AAGTTTGTGCGGCGCGAGCTACCCACAACAATACACTCCGTCACCGTATC
ATAATGGTTATACAGACGTTAACAATTCTTACGATTCGATGTCTTCATTT
AATAATAACCCAATAAATGTTACAAACTCAGCCAAGAAACGAAAAATGAG
CCCTACTACACATCCACGTGTACGTAAAACGTCAACCGTACGTGAACGTA
CGCGAACGCATAACGTAAACGATGGATTTGTAACCTTACGTAATTTGATC
CCAACTGATCCACCAGATCGGAAACTTTCGAAAATCGAGACCTTGAGGCT
AGCTTCAAGCTACATTTGGCATTTGAACTCTATTTTGTTGAATTCACCTC
AACAGACTGAGGCGATACATTCTCACGGCACCGATTTATGTTACATCACG
TGCTGTATGGGAACTGACCGTATTTGTACTTTTTGCGTCTCTTTCCTTAA
ATCGATTGGAAGTTTGTGATTTCAGCATTTGAATATTCAAATCATTGTTT
AATACTTTAGTTTTCGTAGAATGAAATGGTATTTTCCGAGAAATGAGACT
CTCAAAAGCAATCTTGTACCCAGAGCCAcacaactttttgattttgctga
ATCTTAAACTTTCCTATCAAAATCATAAGCGAATTAAGGGACTGGGATCG
AGTTCGTGAGTCTCAATAGGCTTCTACAAGAATTCttgatatttatgacg
taattttCTATACGGAAACACCAGGCGTTTGCCActagttttgaatttaa
acattgaaactggtggcaaacgcccAGTGCTTTTCGTGTGTTTttcgtat
aaaagattacgtcatgaatatcaagtaTGCGTTTTAAGCAGCGGGATCTA
ACATCTAACAATTTTTTATCCAAACTTATTCCAACAGGCAAAATCCGTGG
TTATCTGACTTAAGTAGTTGATGATCCTGTAAGCGAGATTGATTTCAATT
TCTAGagtgtcgaaaaaaaaacataatttagTAAAAATGTAAGAGGTTTC
ATGTACATTATTTATGGggattttttttaccaaatttagttttcaagttt
tatttttatattcacAAAGTTGATGAATTTTTACTTCGAAATATTAACTT
CACAAAAACTATGAACTGTtaagttttgtaattttgacaAAAGATGGAT Coding sequence (CDS) from alignment at sc0000436:48207..50155 >TCONS_00022936 ID=TCONS_00022936|Name=TCONS_00022936|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000436:48207..50155 (Clytia hemisphaerica)
ATGATTATCAGCGAGAGCTTGAGAGCATCAATGCATCGACCATCTTCACC
ATCTTATGATTTAGACACTGGAACAGGAACTTTACTTGAGGAAGGAGGAG
GGGGTACGTCCTCATGGTTGAATCTCCCTCAACGGGAGGATGATGCCCCT
ATGTCACCCGTCATCTTGCCACCGCATCTTTCAAACTCTTTATCCAGTGT
CAATTCAAGCAAGTCAGACACCGATCAAAGATATCAACCACAATATGATT
CAAATAGCGATGCGGCATCAGATATGGGCAGAACACCTGGAATTGAGATG
ATGCTGCAATATAATGACTTGAATCGCGAAGTATTTGAGAATCTTTCATC
CAACAACACTGTCACCAACAATAACAATAGATATAATGAATATTCTAAAC
GACTGTACGATAATTTTTACCGGTATAACCAAACAGCAGCAAACTCTTCT
TTTAGTAACGGGGCGTATACTTATCCACGCCCGTCAAGTTTGTGCGGCGC
GAGCTACCCACAACAATACACTCCGTCACCGTATCATAATGGTTATACAG
ACGTTAACAATTCTTACGATTCGATGTCTTCATTTAATAATAACCCAATA
AATGTTACAAACTCAGCCAAGAAACGAAAAATGAGCCCTACTACACATCC
ACGTGTACGTAAAACGTCAACCGTACGTGAACGTACGCGAACGCATAACG
TAAACGATGGATTTGTAACCTTACGTAATTTGATCCCAACTGATCCACCA
GATCGGAAACTTTCGAAAATCGAGACCTTGAGGCTAGCTTCAAGCTACAT
TTGGCATTTGAACTCTATTTTGTTGAATTCACCTCAACAGACTGAGGCGA
TACATTCTCACGGCACCGATTTATGTTACATCACGTGCTGTATGGGAACT
GACCGTATTTGTACTTTTTGCGTCTCTTTCCTTAAATCGATTGGAAGTTT
GTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022936-exon-sc0000436-1491911889:48207..50155 | TCONS_00022936-exon-sc0000436-1491911889:48207..50155 | Clytia hemisphaerica | exon |
| TCONS_00022936-exon-sc0000436-1510915933:48207..50155 | TCONS_00022936-exon-sc0000436-1510915933:48207..50155 | Clytia hemisphaerica | exon |
| TCONS_00022936-exon-sc0000436-1575043694:48207..50155 | TCONS_00022936-exon-sc0000436-1575043694:48207..50155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:48207..50155 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00022936 vs. Swiss-Prot (Human)
Match: TCF15 (Transcription factor 15 OS=Homo sapiens GN=TCF15 PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 9.133e-17 Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = -1
Query: 708 RKTSTVRERTRTHNVNDGFVTLRNLIPTDPPDRKLSKIETLRLASSYIWHLNSILLNSPQQTEA---IHSHGTDLCYITCCMGTDR----ICTFCVS 977
R+ + RER RT +VN F LR LIPT+P DRKLSKIET+RLASSYI HL ++LL + + G+ + R ICTFC+S
Sbjct: 74 RQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLS 170
The following BLAST results are available for this feature:
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