TCONS_00022977-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022977-protein
Unique Name	TCONS_00022977-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	408

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022977-protein ID=TCONS_00022977-protein|Name=TCONS_00022977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
TISFFRMTNKRMEQIEGKDSESKLGVLSPNFQSTPLVKKDYGMKGISPRS
LYQSSNSTYGIGANRMDTKLSNSNGKSPVFSPSFSNGTPNSYRKSISPGT
KLSDVDSSTVLRQRHELQLMIAELKDRDRELNELVSSHHQQLVAWELDRQ
RLITVEKQMAKFKSELKKRHSQCKILKDRLKEVEGQYSMKTTELESTQKH
LHQVSQKASDNEIEVEEYRATNVTLKETVTELTKSLAESQSRQQEIATIL
RLKDKDIEDANSRIGELTEKLQTSNKDLKKSKQFENQSKIHIDKLTQEKT
SLKSQLEKLEEAVIKQNTTNDESMEEFNNMKQEMVVVQKELLLAGEREKR
KDSLLQLSRSKQERTEMELKQVRKVLTLKFIYSRVPNSQGGPLINFWKIF
HPGHSYSN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012909	XLOC_012909	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022977	TCONS_00022977	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 292..340
None	No IPR available	COILS	Coil	Coil	coord: 250..277
None	No IPR available	COILS	Coil	Coil	coord: 114..134
None	No IPR available	GENE3D	1.20.5.730		coord: 263..343 e-value: 0.15 score: 11.6
None	No IPR available	GENE3D	1.20.5.340		coord: 140..262 e-value: 2.1E-5 score: 23.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..104

Blast

[Close]

BLAST of TCONS_00022977-protein vs. Swiss-Prot (Human)
Match: CCD62 (Coiled-coil domain-containing protein 62 OS=Homo sapiens GN=CCDC62 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.113e-51
Identity = 113/292 (38.70%), Postives = 180/292 (61.64%), Query Frame = 0

Query:  103 SDVDSSTVLRQRHELQLMIAELKDRDRELNELVSSHHQQLVAWELDRQRLITVEKQMAKFKSELKKRHSQCKILKDRLKEVEGQYSMKTTELESTQKHLHQVSQKASDNEIEVEEYRATNVTLKETVTELTKSLAESQSRQQEIATILRLKDKDIEDANSRIGELTEKLQTSNKDLKKSKQFENQSKIHIDKLTQEKTSLKSQLEKLEEAVIKQNTTNDESMEEFNNMKQEMVVVQKELLLAGEREKRKDSLLQLSRSKQERTEMELKQVRKVLT-----LKFIYSRVPNSQ 389
            S+V+ ST+ +QR ELQL+I ELKDRD+ELN++V+ H QQL++WE DRQ+++T+E++ +K + EL KR    + L  ++K +E       T L+ TQ  L +++QKA+ + +  E+  A N TL  T+ EL+  + + Q+R+Q + T+++LKDKDI +A + I + + K +     L+ +K  E           Q+  +LK ++ KL+E + ++ T N+E  EE   +KQE   +  ELL   EREKRKD LL +++SKQERT  EL  +R++       L+F+   V NSQ
Sbjct:   16 SEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQ 307

The following BLAST results are available for this feature:

BLAST of TCONS_00022977-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022977-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD62	1.113e-51	38.70	Coiled-coil domain-containing protein 62 OS=Homo s...	[more]

You are here

TCONS_00022977-protein (polypeptide) - C. hemisphaerica