TCONS_00023050-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023050-protein
Unique NameTCONS_00023050-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023050-protein ID=TCONS_00023050-protein|Name=TCONS_00023050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
IWNTQNIYQSLEKGVGSFSFSRFINLSPKELVLLFRSQIFRLIHSFLVLS
HLQHTHTLQPFITRAEDDGSNFHNEPSQKKYLTRKDLLICSPRHHSMFNS
SQRDFVFVRSTSTCSGFNSCKIIEVVKENSLPKCPEERHCVAVDYPMFLS
SYMPKVYSPPIEVYCSDRSAAYQYKRRAFGTDDLLEFYMHGPCSQPTNRQ
LLFYPPPRQGLQALQPVNGWSRVRVPNRTALLSDSGKLLVLDQLLTRMKR
EGHRVLIYSQMTKMIDILEEFMNYRQHSYIRLDGSSKISDRRDMVNDFQS
RDDIFAFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ
KRQVTVYRLVTKGTVEEKILNRAREKSEIQNIVISGGQMKTDVLRPKEVV
SLLLDDVELEAKLKQKQAEKKLAEMSGKRPGRKRKNPVEQNNGEPSKLQR
TVSDGPADVLKNADHLLQRTDSFESIDENSMSSIDFSGVNQSEVATDGSS
RPPSATGSPGQSPSTSGTKRGRGRGRGRGGKAKSGSLAKAAASVAAAAGA
MAGRDAAYAQYGYSFQKNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012950XLOC_012950Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023050TCONS_00023050Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 404..424
NoneNo IPR availableGENE3D3.40.50.300coord: 224..387
e-value: 6.0E-39
score: 132.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 478..545
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..454
NoneNo IPR availableCDDcd00079HELICccoord: 233..357
e-value: 7.21051E-31
score: 115.798
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 266..349
e-value: 3.1E-23
score: 93.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 237..349
e-value: 6.6E-19
score: 68.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 240..395
score: 19.626
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 228..407

Blast
[Close]
BLAST of TCONS_00023050-protein vs. Swiss-Prot (Human)
Match: INO80 (DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 399.438 bits (1025), Expect = 2.015e-124
Identity = 251/574 (43.73%), Postives = 332/574 (57.84%), Query Frame = 0 
Query:   18 FSFSRFINLSPKELV-LLFRSQIFRLIHSFLVLSHLQHTHTLQPFITRAEDDGSNFHNEPSQKKYLTRKDLLICSPRHHSMFNSSQ----RDFVFVRSTSTCSGFNSCKIIEVVKENSLPKCPEERHCVAVDYPMFLSSYMPKVYSPPIEVYCSDRSAAYQYKRRAF---GTDDLLEFYMHGP---CSQPTNRQLLFYPPPRQGLQALQPVNGWSRVRVPNRTALLSDSGKLLVLDQLLTRMKREGHRVLIYSQMTKMIDILEEFMNYRQHSYIRLDGSSKISDRRDMVNDFQSRDDIFAFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQKRQVTVYRLVTKGTVEEKILNRAREKSEIQNIVISGGQMKTDVLRPKEVVSLLLDDVELEAKLKQKQAEKKLAEMSGKRPGRKRKNPVEQN--------NGEPSKLQRTVSDGPADVLKNADHLLQRTDSFESID--------ENSMSS--------IDFSGVNQSEVATDGSSRPPS--ATGSPGQ-----SPSTSGTKRGRGRGRGRGGKAKSGSLAKAAASVAAAAG 549
            FSF RFI++SP E+  L+ +  + R +  FL L      H L+ +      +G       S ++YL  KD L+      S  N       +  VF       SG++     +VV +         R C+  + P FL    P+V + P++ YC+DRSA  +Y+RR     G+    +  ++G     +   NR+  F+P P  GL +++P NGWS +R+P + +L++DSGKL  LD LLTR+K +GHRVLIYSQMT+MID+LEE+M YR+H+Y+RLDGSSKIS+RRDMV DFQ+R+DIF FLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ +QVTVYRL+ KGT+EE+IL RA+EKSEIQ +VISGG  K D L+PKEVVSLLLDD ELE KL+ +Q EK+  E + +   RKRK              +G+  K    +         N++      DSF S+D        E S+SS        +D S  +   +  D +S  P   AT SP       S + +G         GRG  A+S    K + S A  AG
Sbjct:  888 FSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSW---GAPEGE------SHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSD----QVVHQRR-SATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSA--EYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPLDESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGSTAKGAG 1445
The following BLAST results are available for this feature:
BLAST of TCONS_00023050-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INO802.015e-12443.73DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 S... [more]
back to top