TCONS_00023163-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023163-protein
Unique NameTCONS_00023163-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023163-protein ID=TCONS_00023163-protein|Name=TCONS_00023163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
LVVKMKIYVTTLTGKIITIEGLESNDTTEIVREKIQDKEGIPPDQQRLIF
SGKQMLDGYPLAYYLIQDTATVHLVLRLRGMISNFSGYDTNDPLIEYLMK
GDVNGCDVSKELLKEKRGNSNGSANSEILLNYTGNKLLNEKQRARLIAVA
DYDYNLQKIEGKSEIILQDIKIVLPSGILKAISQSNDIEKLLKSHHHYSS
KDDQMKVVLRRTAPTLGCLPWHVDGVYSSCVVQYTLNDDKSYTGGRLCFF
TDDIGLFVPQRPAGTLSVHYKEMHGVSKLLSGVRYVLFIICSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013020XLOC_013020Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023163TCONS_00023163Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 16..36
score: 35.45
coord: 58..79
score: 57.43
coord: 37..57
score: 81.85
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 5..77
e-value: 3.4E-19
score: 79.8
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 7..79
e-value: 6.5E-21
score: 73.7
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 5..81
score: 20.065
NoneNo IPR availableGENE3D3.10.20.90coord: 3..87
e-value: 7.1E-29
score: 98.9
NoneNo IPR availableGENE3D2.60.120.620coord: 104..292
e-value: 4.8E-6
score: 26.0
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 5..80

Blast
[Close]
BLAST of TCONS_00023163-protein vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 5.409e-27
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:    5 MKIYVTTLTGKIITIEGLESNDTTEIVREKIQDKEGIPPDQQRLIFSGKQMLDGYPLAYYLIQDTATVHLVLRLRGMI 82
            M+I+V TLTGK IT+E +E +DT E V+ KIQDKEGIPPDQQRLIF+GKQ+ DG  L+ Y IQ  +T+HLVLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00023163-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL405.409e-2766.67Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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