TCONS_00023163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023163
Unique NameTCONS_00023163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023163 ID=TCONS_00023163|Name=TCONS_00023163|organism=Clytia hemisphaerica|type=transcript|length=1434bp
acttagtagtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATA
ATCACCATTGAAGGCCTTGAATCCAATGACACTACCGAAATTGTAAGAGA
AAAAATACAAGATAAGGAAGGCATTCCACCTGACCAACAACGTCTGATTT
TCAGTGGTAAGCAGATGTTAGATGGCTATCCGTTAGCATACTATTTGATC
CAGGATACAGCTACAGTGCATTTGGTGCTTCGTTTGCGCGGTATGATCTC
AAATTTCTCAGGCTATGATACTAATGATCCATTGATAGAATATTTGATGA
AAGGAGATGTTAATGGCTGTGATGTATCTAAAGAActcttaaaagaaaaa
agggGCAATTCTAATGGGTCagcaaattctgaaattttgctTAACTACAC
AGGGAATAAGCTATTGAATGAGAAACAAAGAGCCAGACTGATTGCTGTCG
CAGATTATGATTACAATCTCCAGAAGATTGAAGGAAAATCTGAAATCATC
CTACAGGATATTAAAATAGTACTACCATCTGGTATTCTCAAAGCGATTTC
TCAATCTAATGAtattgaaaagcttttaaaaagTCACCATCACTATTCAT
CAAAAGATGACCAAATGAAAGTTGTATTAAGAAGAACTGCCCCAACTCTA
GGTTGTCTTCCTTGGCATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCA
GTACACATTGAATGATGATAAATCCTATACTGGAGGTCGTTTATGTTTTT
TCACAGATGACATTGGCTTGTTTGTGCCTCAGAGACCAGCTGGTACATTA
TCTGTTCATTATAAAGAGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGT
ACGTTATGTTTTGTTCATTATCTGTTCATTATAAAGAGATGCATGGCGTG
TCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTGTTGACATCGC
AAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGAATTCAACCAAAAGA
TAATGGATCATATGAATTCTGGAATCAATCTCATGTCAGCCAAGAACAAG
AATGTCATTGAAGTGAAAAGCGATAGTGAGGATAATAATGTGCAAGCCCT
ATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAACCTAACTCTTCCAAC
TTTATATTGCACCTTACTTGTCTGCTATTATCAGCTGGATTGCGGTTTAA
ACATATAATGTCGATGATTGCAACTGCACTTTGTAATTTTGTTGACTTAT
ATTTTAGTTTTCTTTAGATTTAGCAGTTTTATTAGTTTccacttcatttt
tatttacattCTTATTCTTTcaagtttatatttttacatttttatgaaaG
GCCTACCTAGCCAAACAGCTATTTTATAttattgatgattttttgatgat
tttttgtttatgtttttatttatttggataggat
Run BLAST on NCBI

protein sequence of TCONS_00023163-protein

>TCONS_00023163-protein ID=TCONS_00023163-protein|Name=TCONS_00023163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
LVVKMKIYVTTLTGKIITIEGLESNDTTEIVREKIQDKEGIPPDQQRLIF
SGKQMLDGYPLAYYLIQDTATVHLVLRLRGMISNFSGYDTNDPLIEYLMK
GDVNGCDVSKELLKEKRGNSNGSANSEILLNYTGNKLLNEKQRARLIAVA
DYDYNLQKIEGKSEIILQDIKIVLPSGILKAISQSNDIEKLLKSHHHYSS
KDDQMKVVLRRTAPTLGCLPWHVDGVYSSCVVQYTLNDDKSYTGGRLCFF
TDDIGLFVPQRPAGTLSVHYKEMHGVSKLLSGVRYVLFIICSL
Run BLAST on NCBI

transcript from alignment at sc0000444:186707..190486+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023163 ID=TCONS_00023163|Name=TCONS_00023163|organism=Clytia hemisphaerica|type=transcript|length=3780bp|location=Sequence derived from alignment at sc0000444:186707..190486+ (Clytia hemisphaerica)
acttagtagtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATA
ATCACCATTGAAGGCCTTGAATCCAATGACACTACCGAAATTGTAAGAGA
AAAAATACAAGATAAGGAAGGCATTCCACCTGACCAACAACGTCTGATTT
TCAGTGGTAAGCAGATGTTAGATGGCTATCCGTTAGCATACTATTTGATC
CAGGATACAGCTACAGTGCATTTGGTGCTTCGTTTGCGCGGTATGATCTC
AAATTTCTCAGGCTATGATACTAATGATCCATTGATAGAATATTTGATGA
AAGGAGATGTTAATGGCTGTGATGTATCTAAAGAActcttaaaagaaaaa
agggGCAATTCTAATGGGTCagcaaattctgaaattttgctTAACTACAC
AGGGAATAAGCTATTGAATGAGAAACAAAGAGCCAGACTGATTGCTGTCG
CAGATTATGATTACAATCTCCAGAAGATTGAAGGAAAATCTGAAATCATC
CTACAGGATATTAAAATAGTACTACCATCTGGTATTCTCAAAGCGATTTC
TCAATCTAATGAtattgaaaagcttttaaaaagTCACCATCACTATTCAT
CAAAAGATGACCAAATGAAAGTTGTATTAAGAAGAACTGCCCCAACTCTA
GGTTGTCTTCCTTGGCATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCA
GTACACATTGAATGATGATAAATCCTATACTGGAGGTCGTTTATGTTTTT
TCACAGATGACATTGGCTTGTTTGTGCCTCAGAGACCAGCTGGTACATTA
TCTGTTCATTATAAAGAGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGT
ACGTTATGTTTTGTTCATTGTTGACATCGCAAATGGCTTGGGTGGAGCTA
AAGAGAATATTATAGAATTCAACCAAAAGATAATGGATCATATGAATTCT
GGAATCAATCTCATGTCAGCCAAGAACAAGAATGTCATTGAAGTGAAAAG
CGATAGTGAGGATAATAATGTGCAAGCCCTATTCACAACTAGAGCTGCTA
AAAGAGCCAGGAAAACCTAACTCTTCCAACTTTATATTGCACCTTACTTG
TCTGCTATTATCAGCTGGATTGCGGTTTAAACATATAAGATCGATGATTG
CAACTGCACTTTATATTTTAGTTTTCTTTAGATTTATTTAGCAGTTTTAT
TAGTTTccacttcatttttatttacattCTTATTCTTTcaagtttatatt
tttacatttttatgaaaGGCCTACCTANATTTAAAAAGTCACCATCATTA
TTCATCAAAAGATGACCAAATGAAAGTTGTATTAAGAAGAACTGCCCCAA
CTCTAGGTTGTCTTCCTTGGCATGTTGATGGGGTTTATTCTTCTTGTGTC
GTCCAGTACACATTGAATGATGATAAATCCTATACTGGAGGTCGTTTATG
TTTTTTCACAGATGACATTGGCTTGTTTGTGCCTCAGAGACCAGCTGGTA
CATTATCTGTTCATTATAAAGAGATGCATGGCGTGTCAAAGCTTCTGAGT
GGTGTACGTTATGTTTTGTTCATTGTTGACATCGCAAATGGCTTGGGTGG
AGCTAAAGAGAATATTATAGAATTCAACCAAAAGATAATGGATCATATGA
ATTCTGGAATCAATCTCATGTCAGCCAAGAACAAGAATGTCATTGAAGTG
AAAAGCGATAGTGAGGATAATAATGTGCAAGCCCTATTCACAACTAGAGC
TGCTAAAAGAGCCAGGAAAACCTAACTCTTCCAACTTTATATTGCACCTT
ACTTGTCTGCTATTATCAGCTGGATTGCGGTTTAAACATATAATGTCGAT
GATTGCAACTGCACTTTGTAATTTTGTTGACTTATATTTTAGTTTTCTTT
AGATTTAGCAGTTTTATTAGTTTccacttcatttttatttacattCTTAT
TCTTTcaagtttatatttttacatttttatgaaaGGCCTACCTAGCCAAA
CAGCTATTTTATAttattgatgattttttgatgattttttaagaGGATTC
Atcgttttgtttatatttttatttatttggataggatacatttttaaaag
tttttagatattttgaacTTGGCTATTTAAAGCATAgtatatattttaat
tttgttaaAGCATAAGACTTTATTTTGAATGTCACACACAGCGTGTTAAA
TTTAAATTCACCCATTTAACTCCTACAGAAAGTAATTTTGATTTATAGAA
TACAGTTGAGCTCTTACTATAAGAATCATTCATCGATATCTGCATATTAA
AACTAAGAAAATCATTTACATAAGGCAAGACCAATTTGAtcagttgtttt
acgggccagaCCGATCCTGAAACtctaaaaatcgaaataaaaataaaatt
gattttggtagtacaattttattttcattgctttacagaatgccatattt
tcaaagttttggtaGTTTTCCCAaggttttaagaattttatgttcaattt
ttcatttcatctatGAATTTtacctttttgtgtctttttatatctatttt
gcattttttgttaagatatgtagtagtttttgctgccttttcaggagatt
ttataggtgaaattcttcttttctttttattttttcgctgaccgaccgac
cctcttttttgagTAGCTTGgcctgtaaaacaacaaattaagaGCAGATG
CAGCTAAGAATCAGAAGAGCTCAATATAAAGTGGGATCATGGGGGTCTTC
AAATCTTCCTGAAATTTTGACACAAGGTCACATATCTTGGGTGGATCACA
CACAAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAATGATGATAAATCCTATACTGGA
GGTCGTTTATGTTTTTTCACAGATGACATTGGCTTGTTTGTGCCTCAGAG
ACCAGCTGGTACATTATCTGTTCATTATAAAGAGATGCATGGCGTGTCAA
AGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTGTTGACATCGCAAAT
GGCTTGGGTGGAGCTAAAGAGAATATTATAGAATTCAACCAAAAGATAAT
GGATCATATGAATTCTGGAATCAATCTCATGTCAGCCAAGAACAAGAATG
TCATTGAAGTGAAAAGCGATAGTGAGGATAATAATGTGCAAGCCCTATTC
ACAACTAGAGCTGCTAAAAGAGCCAGGAAAACCTAACTCTTCCAACTTTA
TATTGCACCTTACTTGTCTGCTATTATCAGCTGGATTGCGGTTTAAACAT
ATAATGTCGATGATTGCAACTGCACTTTGTAATTTTGTTGACTTATATTT
TAGTTTTCTTTAGATTTAGCAGTTTTATTAGTTTccacttcatttttatt
tacattCTTATTCTTTcaagtttatatttttacatttttatgaaaGGCCT
ACCTAGCCAAACAGCTATTTTATAttattgatgattttttgatgattttt
tgtttatgtttttatttatttggataggat

Coding sequence (CDS) from alignment at sc0000444:186707..190486+

>TCONS_00023163 ID=TCONS_00023163|Name=TCONS_00023163|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000444:186707..190486+ (Clytia hemisphaerica)
ttagtagtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATAAT
CACCATTGAAGGCCTTGAATCCAATGACACTACCGAAATTGTAAGAGAAA
AAATACAAGATAAGGAAGGCATTCCACCTGACCAACAACGTCTGATTTTC
AGTGGTAAGCAGATGTTAGATGGCTATCCGTTAGCATACTATTTGATCCA
GGATACAGCTACAGTGCATTTGGTGCTTCGTTTGCGCGGTATGATCTCAA
ATTTCTCAGGCTATGATACTAATGATCCATTGATAGAATATTTGATGAAA
GGAGATGTTAATGGCTGTGATGTATCTAAAGAActcttaaaagaaaaaag
ggGCAATTCTAATGGGTCagcaaattctgaaattttgctTAACTACACAG
GGAATAAGCTATTGAATGAGAAACAAAGAGCCAGACTGATTGCTGTCGCA
GATTATGATTACAATCTCCAGAAGATTGAAGGAAAATCTGAAATCATCCT
ACAGGATATTAAAATAGTACTACCATCTGGTATTCTCAAAGCGATTTCTC
AATCTAATGAtattgaaaagcttttaaaaagTCACCATCACTATTCATCA
AAAGATGACCAAATGAAAGTTGTATTAAGAAGAACTGCCCCAACTCTAGG
TTGTCTTCCTTGGCATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCAGT
ACACATTGAATGATGATAAATCCTATACTGGAGGTCGTTTATGTTTTTTC
ACAGATGACATTGGCTTGTTTGTGCCTCAGAGACCAGCTGGTACATTATC
TGTTCATTATAAAGAGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGTAC
GTTATGTTTTGTTCATTATCTGTTCATTATAAttagtagtcaaaatgaag
atttatGTAACAACTTTGACAGGTAAAATAATCACCATTGAAGGCCTTGA
ATCCAATGACACTACCGAAATTGTAAGAGAAAAAATACAAGATAAGGAAG
GCATTCCACCTGACCAACAACGTCTGATTTTCAGTGGTAAGCAGATGTTA
GATGGCTATCCGTTAGCATACTATTTGATCCAGGATACAGCTACAGTGCA
TTTGGTGCTTCGTTTGCGCGGTATGATCTCAAATTTCTCAGGCTATGATA
CTAATGATCCATTGATAGAATATTTGATGAAAGGAGATGTTAATGGCTGT
GATGTATCTAAAGAActcttaaaagaaaaaagggGCAATTCTAATGGGTC
agcaaattctgaaattttgctTAACTACACAGGGAATAAGCTATTGAATG
AGAAACAAAGAGCCAGACTGATTGCTGTCGCAGATTATGATTACAATCTC
CAGAAGATTGAAGGAAAATCTGAAATCATCCTACAGGATATTAAAATAGT
ACTACCATCTGGTATTCTCAAAGCGATTTCTCAATCTAATGAtattgaaa
agcttttaaaaagTCACCATCACTATTCATCAAAAGATGACCAAATGAAA
GTTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGCATGT
TGATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGATGATA
AATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGGCTTG
TTTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAGAGAT
GCATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTA
TCTGTTCATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013020XLOC_013020Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023163-proteinTCONS_00023163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023163-exon-sc0000444-1491911889:186707..187572TCONS_00023163-exon-sc0000444-1491911889:186707..187572Clytia hemisphaericaexon
TCONS_00023163-exon-sc0000444-1510915933:186707..187572TCONS_00023163-exon-sc0000444-1510915933:186707..187572Clytia hemisphaericaexon
TCONS_00023163-exon-sc0000444-1575043694:186707..187572TCONS_00023163-exon-sc0000444-1575043694:186707..187572Clytia hemisphaericaexon
TCONS_00023163-exon-sc0000444-1491911889:189919..190486TCONS_00023163-exon-sc0000444-1491911889:189919..190486Clytia hemisphaericaexon
TCONS_00023163-exon-sc0000444-1510915933:189919..190486TCONS_00023163-exon-sc0000444-1510915933:189919..190486Clytia hemisphaericaexon
TCONS_00023163-exon-sc0000444-1575043694:189919..190486TCONS_00023163-exon-sc0000444-1575043694:189919..190486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:186707..190486 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08327	0.56591	1.15026	0.218858	7.53196	4.18731	3.09553	3.83989	2.96573	3.36461	4.10033	2.38435	3.49018	2.9553	2.09171	2.12194	1.35729	3.59391	0.0230243	0.0700035	2.37849	1.98348	2.5251	3.22139	4.09863	6.87829	1.81721	1.40634	1.98839	2.79133
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00023163 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.124e-25
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 3 
Query:   15 MKIYVTTLTGKIITIEGLESNDTTEIVREKIQDKEGIPPDQQRLIFSGKQMLDGYPLAYYLIQDTATVHLVLRLRGMI 248
            M+I+V TLTGK IT+E +E +DT E V+ KIQDKEGIPPDQQRLIF+GKQ+ DG  L+ Y IQ  +T+HLVLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00023163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL402.124e-2566.67Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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