XLOC_013020 (gene) - C. hemisphaerica

Overview
NameXLOC_013020
Unique NameXLOC_013020
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000444:186028..190486+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013020 ID=XLOC_013020|Name=XLOC_013020|organism=Clytia hemisphaerica|type=gene|length=4459bp|location=Sequence derived from alignment at sc0000444:186028..190486+ (Clytia hemisphaerica)
aaactggtaaaattagcaaattttagctatttttataattcttttaattt
tttggatgacttttctgtaAAATCAAGCCGAAAAGCAACCGAAAAATAGG
tcgtctccatgacaaattgtcccaaaaacttttactaccagggtagtaaa
atacctcttccaagagtctgggtggtggtatgtaaaaattcgtaaaaatc
cttttactactcatatatgtctgagattttactattGACGCCCCCTGATT
TTGCTGCTCTTTAATTTTAAGCCACCATATGCTAAATTTAAATGTTATGA
AAACTCAGAGAAACACAAAACTAATTTCTGATATAATTCTAATACCATTA
TAAACTAACCATGCCAAATATCAATTTGATTGTAATATTGTTATTAGATC
TCTaggtaaacatttttaaaatttctcttCCCTTCCCTATTATCAAGATT
TTGCTATTTTGACCCAGTTtggctaatttttttttacccagCTAACATCT
CTTATCTGTGTGTTTATATCACCCTTtactgttttcttttttacttagta
gtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATAATCACCAT
TGAAGGCCTTGAATCCAATGACACTANACTAACATCTCTTATCTGTGTGC
TTATATCACCCTTtactgttttcttttttacttagtagtcaaaatgaaga
tttatGTAACAACTTTGACAGGTAAAATAATCACCATTGAAGGCCTTGAA
TCCAATGACACTACCGAAATTGTAAGAGAAAAAATACAAGATAAGGAAGG
CATTCCACCTGACCAACAACGTCTGATTTTCAGTGGTAAGCAGATGTTAG
ATGGCTATCCGTTAGCATACTATTTGATCCAGGATACAGCTACAGTGCAT
TTGGTGCTTCGTTTGCGCGGTATGATCTCAAATTTCTCAGGCTATGATAC
TAATGATCCATTGATAGAATATTTGATGAAAGGAGATGTTAATGGCTGTG
ATGTATCTAAAGAActcttaaaagaaaaaagggGCAATTCTAATGGGTCa
gcaaattctgaaattttgctTAACTACACAGGGAATAAGCTATTGAATGA
GAAACAAAGAGCCAGACTGATTGCTGTCGCAGATTATGATTACAATCTCC
AGAAGATTGAAGGAAAATCTGAAATCATCCTACAGGATATTAAAATAGTA
CTACCATCTGGTATTCTCAAAGCGATTTCTCAATCTAATGAtattgaaaa
gcttttaaaaagTCACCATCACTATTCATCAAAAGATGACCAAATGAAAG
TTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGCATGTT
GATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGATGATAA
ATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGGCTTGT
TTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAGAGATG
CATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTGT
TGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGAATTCA
ACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGTCAGCC
AAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAATAATGT
GCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAACCTAAC
TCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCTGGATT
GCGGTTTAAACATATAAGATCGATGATTGCAACTGCACTTTATATTTTAG
TTTTCTTTAGATTTATTTAGCAGTTTTATTAGTTTccacttcatttttat
ttacattCTTATTCTTTcaagtttatatttttacatttttatgaaaGGCC
TACCTANATTTAAAAAGTCACCATCATTATTCATCAAAAGATGACCAAAT
GAAAGTTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGC
ATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGAT
GATAAATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGG
CTTGTTTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAG
AGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTC
ATTGTTGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGA
ATTCAACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGT
CAGCCAAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAAT
AATGTGCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAAC
CTAACTCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCT
GGATTGCGGTTTAAACATATAATGTCGATGATTGCAACTGCACTTTGTAA
TTTTGTTGACTTATATTTTAGTTTTCTTTAGATTTAGCAGTTTTATTAGT
TTccacttcatttttatttacattCTTATTCTTTcaagtttatattttta
catttttatgaaaGGCCTACCTAGCCAAACAGCTATTTTATAttattgat
gattttttgatgattttttaagaGGATTCAtcgttttgtttatattttta
tttatttggataggatacatttttaaaagtttttagatattttgaacTTG
GCTATTTAAAGCATAgtatatattttaattttgttaaAGCATAAGACTTT
ATTTTGAATGTCACACACAGCGTGTTAAATTTAAATTCACCCATTTAACT
CCTACAGAAAGTAATTTTGATTTATAGAATACAGTTGAGCTCTTACTATA
AGAATCATTCATCGATATCTGCATATTAAAACTAAGAAAATCATTTACAT
AAGGCAAGACCAATTTGAtcagttgttttacgggccagaCCGATCCTGAA
ACtctaaaaatcgaaataaaaataaaattgattttggtagtacaatttta
ttttcattgctttacagaatgccatattttcaaagttttggtaGTTTTCC
CAaggttttaagaattttatgttcaatttttcatttcatctatGAATTTt
acctttttgtgtctttttatatctattttgcattttttgttaagatatgt
agtagtttttgctgccttttcaggagattttataggtgaaattcttcttt
tctttttattttttcgctgaccgaccgaccctcttttttgagTAGCTTGg
cctgtaaaacaacaaattaagaGCAGATGCAGCTAAGAATCAGAAGAGCT
CAATATAAAGTGGGATCATGGGGGTCTTCAAATCTTCCTGAAATTTTGAC
ACAAGGTCACATATCTTGGGTGGATCACACACAAAAAATTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATGATGATAAATCCTATACTGGAGGTCGTTTATGTTTTTTCACA
GATGACATTGGCTTGTTTGTGCCTCAGAGACCAGCTGGTACATTATCTGT
TCATTATAAAGAGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTT
ATGTTTTGTTCATTGTTGACATCGCAAATGGCTTGGGTGGAGCTAAAGAG
AATATTATAGAATTCAACCAAAAGATAATGGATCATATGAATTCTGGAAT
CAATCTCATGTCAGCCAAGAACAAGAATGTCATTGAAGTGAAAAGCGATA
GTGAGGATAATAATGTGCAAGCCCTATTCACAACTAGAGCTGCTAAAAGA
GCCAGGAAAACCTAACTCTTCCAACTTTATATTGCACCTTACTTGTCTGC
TATTATCAGCTGGATTGCGGTTTAAACATATAATGTCGATGATTGCAACT
GCACTTTGTAATTTTGTTGACTTATATTTTAGTTTTCTTTAGATTTAGCA
GTTTTATTAGTTTccacttcatttttatttacattCTTATTCTTTcaagt
ttatatttttacatttttatgaaaGGCCTACCTAGCCAAACAGCTATTTT
ATAttattgatgattttttgatgattttttgtttatgtttttatttattt
ggataggat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023162TCONS_00023162Clytia hemisphaericatranscript
TCONS_00023163TCONS_00023163Clytia hemisphaericatranscript
TCONS_00023164TCONS_00023164Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023163-proteinTCONS_00023163-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:186028..190486 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27	0.73	1.33	0.62	12.87	9.18	5.65	6.62	6.91	5.38	5.32	3.09	5.23	4.71	3.56	4.82	6.11	4.6	1.31	0.77	4.63	5.21	6.92	7.69	7.02	9.3	3.98	2.13	4.4	5.37