TCONS_00023250-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023250-protein
Unique NameTCONS_00023250-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023250-protein ID=TCONS_00023250-protein|Name=TCONS_00023250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MKTVLTFFLLFVAVLGCIQATKNDCSNCCKDGRDGRDGKDGIGKDGKDGI
AINGKDGRDGRNGVDGKNGINGKPGKDEKDGIDGKDGFKGTNGEDGKNGE
PGKDGKDGIDGKDGKNGIDGKDGKDGKDGKDGKHGTNELLKKNWKECAWK
NVNDGKDNGVIKHCSFKKKSPSTYLKVFVSSNMRINNCNGCCKRWFVTFD
GHECAPVPIDGVVYMRAGAGNRLKDLHRPRVIAGHCKVSKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013076XLOC_013076Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023250TCONS_00023250Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 81..136
e-value: 2.6E-9
score: 36.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..137
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0

Blast
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BLAST of TCONS_00023250-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.960e-30
Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 0 
Query:   95 DGKNGEPGKDGKDGIDGKDGKNGIDGKDGKDGKDGKDGKHGTNELLKKNWKECAWKNVNDGKDNGVIKHCSFKKKSPSTYLKVFVSSNMRINNCNGCCKRWFVTFDGHECA-PVPIDGVVYMRAGAG--NRLKDLHRPRVIAGHCK 237
             G  G PG+DG  G +G  G  GI G+DG  G+ G+  +    E    N+K+C+W ++N G D G I  C+F K   ++ L+V  S ++R+   N CC+RW+ TF+G EC+ P+PI+ ++Y+  G+   N   ++HR   + G C+
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCE 202
The following BLAST results are available for this feature:
BLAST of TCONS_00023250-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR11.960e-3036.30Collagen triple helix repeat-containing protein 1 ... [more]
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