TCONS_00023461-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023461-protein
Unique NameTCONS_00023461-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023461-protein ID=TCONS_00023461-protein|Name=TCONS_00023461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MLFSSVAKLGRAIINQAARAKVPSNSINSHKLILSARKSYPLQFRNMSDT
TGDQPLSKNALKKLEKEKLKAERKAEKKAQQDETAAAQDADDFAKDKYGD
LELIMSKNKTDRKWTDVQNLTLDKKGERVLIRGRLHTARGTGKQCFIVVR
QRYFTVQGFMAVNENISKQMVKFAANINKESIIDVEGIITPVEQKITSCS
QQDVELSIEKIYVVSKSDPRLPLQIEDASRPETEEALAHVNQDTKLDNRI
IDLRTTTNQAIYKLQAAVCRLFREHLNGKGFNEIHTPKIISAASEGGANV
FKVSYFKGSAYLAQSPQLYKQMCIAADFDRVYTIGGVFRAEDSNTHRHLT
EFVGLDLEMAFKEHYHEVVQTIGDLFIHIFKGLRDEYQTEIETVNKQFPS
EPFKFLEPALVLKFPDAIKMLREAGVEIADDEDLSTPNEKFLGKLVRAKY
DTDFYILDKYPLAVRPFYTMPDPENIMYSNSYDMFMRGEEILSGAQRIHD
PEYLTERVKACGVNPEDIKSYIDSFRYGCPPHAGGGIGLERVLMLYLALG
NVRKTSMFPRDPKRVTP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013195XLOC_013195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023461TCONS_00023461Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002312Asp/Asn-tRNA-synth_IIb
IPR004523Asp-tRNA_synthase_2
IPR004364aa-tRNA-synt_II
IPR006195aa-tRNA-synth_II
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006422aspartyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004815aspartate-tRNA ligase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006422 aspartyl-tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0004815 aspartate-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availableGENE3D3.30.930.10coord: 232..556
e-value: 6.1E-94
score: 314.4
NoneNo IPR availableGENE3D2.40.50.140coord: 90..221
e-value: 9.9E-29
score: 99.2
NoneNo IPR availableCDDcd00776AsxRS_corecoord: 239..563
e-value: 2.64259E-172
score: 492.852
NoneNo IPR availableCDDcd04320AspRS_cyto_Ncoord: 129..227
e-value: 9.26221E-45
score: 153.488
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 238..566
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIbPRINTSPR01042TRNASYNTHASPcoord: 312..324
score: 59.09
coord: 329..342
score: 50.81
coord: 522..536
score: 51.36
coord: 482..498
score: 46.52
IPR004523Aspartate-tRNA synthetase, type 2TIGRFAMTIGR00458TIGR00458coord: 120..567
e-value: 1.7E-157
score: 522.7
IPR004523Aspartate-tRNA synthetase, type 2HAMAPMF_02075Asp_tRNA_synth_type2coord: 112..567
score: 40.676
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)PFAMPF00152tRNA-synt_2coord: 242..561
e-value: 1.0E-76
score: 257.9
IPR006195Aminoacyl-tRNA synthetase, class IIPROSITEPS50862AA_TRNA_LIGASE_IIcoord: 263..567
score: 20.818
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 95..220

Blast
[Close]
BLAST of TCONS_00023461-protein vs. Swiss-Prot (Human)
Match: SYDC (Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2)

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 333/496 (67.14%), Postives = 403/496 (81.25%), Query Frame = 0 
Query:   75 AEKKAQQDETAAAQDADDFAKDKYGDLELIMSKNKTDRKWTDVQNLTLDKKGERVLIRGRLHTARGTGKQCFIVVRQRYFTVQGFMAVNENISKQMVKFAANINKESIIDVEGIITPVEQKITSCSQQDVELSIEKIYVVSKSDPRLPLQIEDA---SRPETEEALAHVNQDTKLDNRIIDLRTTTNQAIYKLQAAVCRLFREHLNGKGFNEIHTPKIISAASEGGANVFKVSYFKGSAYLAQSPQLYKQMCIAADFDRVYTIGGVFRAEDSNTHRHLTEFVGLDLEMAFKEHYHEVVQTIGDLFIHIFKGLRDEYQTEIETVNKQFPSEPFKFLEPALVLKFPDAIKMLREAGVEIADDEDLSTPNEKFLGKLVRAKYDTDFYILDKYPLAVRPFYTMPDPENIMYSNSYDMFMRGEEILSGAQRIHDPEYLTERVKACGVNPEDIKSYIDSFRYGCPPHAGGGIGLERVLMLYLALGNVRKTSMFPRDPKRVTP 567
            A +K+Q+        A+D+AK++YG   +I S+ K DR    V++LT+ K  E V +R R+HT+R  GKQCF+V+RQ+ F VQ  +AV ++ SKQMVKFAANINKESI+DVEG++  V QKI SC+QQDVEL ++KIYV+S ++PRLPLQ++DA        EE  A VNQDT+LDNR+IDLRT+T+QA+++LQ+ +C LFRE L  KGF EI TPKIISAASEGGANVF VSYFK +AYLAQSPQLYKQMCI ADF++V++IG VFRAEDSNTHRHLTEFVGLD+EMAF  HYHEV++ I D  + IFKGL++ +QTEI+TVNKQFP EPFKFLEP L L++ +A+ MLREAGVE+ D++DLSTPNEK LG LV+ KYDTDFYILDKYPLAVRPFYTMPDP N   SNSYDMFMRGEEILSGAQRIHDP+ LTER    G++ E IK+YIDSFR+G PPHAGGGIGLERV ML+L L NVR+TSMFPRDPKR+TP
Sbjct:    6 ASRKSQEKPREIMDAAEDYAKERYGISSMIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
The following BLAST results are available for this feature:
BLAST of TCONS_00023461-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYDC0.000e+067.14Aspartate--tRNA ligase, cytoplasmic OS=Homo sapien... [more]
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