TCONS_00023578-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023578-protein
Unique NameTCONS_00023578-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023578-protein ID=TCONS_00023578-protein|Name=TCONS_00023578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MTEEEVMKRGLPDYLRDSLDIVFVGINPGLAAAYTGNYYTGPGNHFWKCL
HLSGFIEQPMTAKDDTRLFRDYNIGFTNMVVRTTKGSNDLSKKELEEGGK
ILTVKMQQYQPKIVVFNGKVSYQVFSKKKKFHFGLQEESVEGTNTRIWVM
PSSSARCAQLPRASDKAPFFKALKRCRNYLKGESNNVVDEQKEFVFADLT
LKGFPRKSTVTST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013248XLOC_013248Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023578TCONS_00023578Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005122Uracil-DNA_glycosylase-like
IPR015637MUG/TDG
Vocabulary: Molecular Function
TermDefinition
GO:0019104DNA N-glycosylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0019104 DNA N-glycosylase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005122Uracil-DNA glycosylase-likeSMARTSM00986UDG_2coord: 12..174
e-value: 2.3E-5
score: 33.8
IPR005122Uracil-DNA glycosylase-likePFAMPF03167UDGcoord: 13..172
e-value: 3.7E-20
score: 72.4
IPR005122Uracil-DNA glycosylase-likeGENE3D3.40.470.10coord: 1..209
e-value: 8.3E-64
score: 214.5
IPR005122Uracil-DNA glycosylase-likeSUPERFAMILY52141Uracil-DNA glycosylase-likecoord: 11..174
NoneNo IPR availableSMARTSM00987UDG_2_acoord: 12..174
e-value: 2.3E-5
score: 33.8
IPR015637G/U mismatch-specific DNA glycosylaseCDDcd10028UDG_F2_MUGcoord: 11..175
e-value: 1.08406E-69
score: 211.611

Blast
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BLAST of TCONS_00023578-protein vs. Swiss-Prot (Human)
Match: TDG (G/T mismatch-specific thymine DNA glycosylase OS=Homo sapiens GN=TDG PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 1.971e-69
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 0 
Query:    1 MTEEEVMKRGLPDYLRDSLDIVFVGINPGLAAAYTGNYYTGPGNHFWKCLHLSGFIEQPMTAKDDTRLFRDYNIGFTNMVVRTTKGSNDLSKKELEEGGKILTVKMQQYQPKIVVFNGKVSYQVFSKK------KKFHFGLQEESVEGTNTRIWVMPSSSARCAQLPRASDKAPFFKALKRCRNYLKGESNNVVDEQKEFVFADLTL 201
            ++E E++ + LPD L  +LDIV +GINPGL AAY G++Y GPGNHFWKCL +SG  E  +   DD  L   Y IGFTNMV RTT GS DLS KE  EGG+IL  K+Q+YQP+I VFNGK  Y++FSK+      K   FGLQ   +  T T  +VMPSSSARCAQ PRA DK  ++  LK  R+ LKG   N+  ++ ++ F DL L
Sbjct:  114 VSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDVQEVQYTF-DLQL 319
The following BLAST results are available for this feature:
BLAST of TCONS_00023578-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TDG1.971e-6952.66G/T mismatch-specific thymine DNA glycosylase OS=H... [more]
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