Strabismus/van Gogh (polypeptide) - C. hemisphaerica

Overview


Name	Strabismus/van Gogh
Unique Name	TCONS_00023719-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	478

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023719-protein ID=TCONS_00023719-protein|Name=Strabismus/van Gogh|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MDDFDDGVIEVQVIPQDDNWGETATTITETATSVYSDLDDTDPFGEEIEK
HRFQCPNSKQALNILLSVILALMAVVSPIAFVIIPNVSSSLKVTGEECGS
VCEGLYITIAIKEIVLIFGLWALYIRPNKVDLPRLNVFKVGMMVLVYVSI
ICFWLFYSIRMIGNGTNQYLTVSFASSFLDAMLFLHYMALVLMWIRPMEK
VYTVSIIRNVDGMRRYYNIGQSSIQKAAVFCLERYYIDFTEYNPYMPRPQ
SRTKINKLAGLKIYDLDGKGDGTLTQQASKAFIAAAAAGRRKEGRNDRFY
EEQELDRRIRKRKARLVAAAEEAFGHVARLNAFDSSKKADGSMDPEEAAQ
AVFPTLARPLQKYLRTTRQQLYYPLESILKHLAHCISYELSSKAFIERYT
CDQPCISYVGYDGRQEWTLVSDSSPTRQLNEGTVFQLKHEDISLVIAVSK
LPVFAMSELPFNGDSNRFVFRLNSETSV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013328	XLOC_013328	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023719	TCONS_00023719	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009539	VANGL

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009539	Vang-like protein	PFAM	PF06638	Strabismus	coord: 5..478 e-value: 7.3E-160 score: 532.9

Blast

[Close]

BLAST of Strabismus/van Gogh vs. Swiss-Prot (Human)
Match: VANG1 (Vang-like protein 1 OS=Homo sapiens GN=VANGL1 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 5.965e-120
Identity = 195/469 (41.58%), Postives = 294/469 (62.69%), Query Frame = 0

Query:   16 QDDNWGETATTITETATSVYSDLDDTDPFGEEIEKH-RFQCPNSKQALNILLSVILALMAVVSPIAFVIIPNVSSSLKVTGEECGSVCEGLYITIAIKEIVLIFGLWALYIRPNKVDLPRLNVFKVGMMVLVYVSIICFWLFYSIRMIGNGTNQYL-TVSFASSFLDAMLFLHYMALVLMWIRPMEKVYTVSIIRNVDGMRRYYNIGQSSIQKAAVFCLERYYIDFTEYNPYMPRPQSRTKINKLAGLKIYDLDGKGDGTLTQQASKAFIAAAAAGRRKEGRNDRFYEEQELDRRIRKRKARLVAAAEEAFGHVARLNAFDSSKKADGSMDPEEAAQAVFPTLARPLQKYLRTTRQQLYYPLESILKHLAHCISYELSSKAFIERYTCDQPCISYVGYDGRQ----EWTLVSDSSPTRQLNEGTVFQLKHEDISLVIAVSKLPVFAMSELPFNGDSNRFVFRLNSETSV 478
            QDDNWGET T IT T+    S  +D     +++E      C   K+ L + ++  L L+  ++PIAF+++P +    ++  E CG++CEGL+I++A K ++L+ G WAL+ R  + D+PR+ VF+  ++VL+++ ++ +WLFY +R++ +    Y   V +A S +DA+LF+HY+A+VL+ +R ++ ++T+ ++R+ DG  R+Y++G  SIQ+AA+  LE YY DFT YNP +           +AGLK+Y++DG  +    Q  +    AA          N+ +YEE E +RR++KRKARLV A EEAF H+ RL A +  K     MDP EAAQA+FP++AR LQKYLR TRQQ Y+ +ESIL+HLA CI+  ++ KAF+ERY    P +    YD  +    +W LVSD + T  L +G VF LK  D SLV+ V K+P   +SE   +  S++FV RL SETSV
Sbjct:   68 QDDNWGETTTAITGTSEHSISQ-EDIARISKDMEDSVGLDC---KRYLGLTVASFLGLLVFLTPIAFILLPPILWRDEL--EPCGTICEGLFISMAFKLLILLIGTWALFFRKRRADMPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRR---DSSHNELYYEEAEHERRVKKRKARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRITRQQNYHSMESILQHLAFCITNGMTPKAFLERYLSAGPTLQ---YDKDRWLSTQWRLVSDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIILSEEFIDPKSHKFVLRLQSETSV 524

The following BLAST results are available for this feature:

BLAST of Strabismus/van Gogh vs. Swiss-Prot (Human)

BLAST of Strabismus/van Gogh vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VANG1	5.965e-120	41.58	Vang-like protein 1 OS=Homo sapiens GN=VANGL1 PE=1...	[more]

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Strabismus/van Gogh (polypeptide) - C. hemisphaerica