TCONS_00023841-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023841-protein
Unique NameTCONS_00023841-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023841-protein ID=TCONS_00023841-protein|Name=TCONS_00023841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MSQNRVAYFYEPDVGNFHYGVGHPMKPHRLSLTHNLVFNYNLHKKMDIFR
PYQATAYDMTRFHSEDYIHFLQRITPTNKAGFASSFHKFSVGDDSPIFPG
LFNFCSMYTGASLQGAVMLNNKLCDIAVNWSGGLHHAKKFEASGFCYVND
IVIAILELLKYHARVLYIDIDIHHGDGVQEAFYFTDRVMTVSFHKYGNFF
FPGTGDMYELGDETGKYYSLNVPLHDGIDDQTYIALFKPVIQGVMQKYQP
TAIVLQCGADSLAHDRLGCFSLSIKGHGECVNFVKSFGVPLLVLGGGGYT
IRNVSRCWTYETALLVNEPVDEKIPITTDYYGFFAPDYQLCPAMSGNFSN
QNSKSYVDSIRQTVFDHLKFVQSAPSVQMQDTPPDIFSFEPDNEDDNLDE
RLETGKREANNEFYNGEHDVDKTNTEKPHPSALSAAQNKPKEINSEKSKE
KNTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013397XLOC_013397Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023841TCONS_00023841Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR003084His_deacetylse_1
IPR023801His_deacetylse_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004407histone deacetylase activity
Vocabulary: Biological Process
TermDefinition
GO:0016575histone deacetylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016575 histone deacetylation
molecular_function GO:0004407 histone deacetylase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000286Histone deacetylase superfamilyPRINTSPR01270HDASUPERcoord: 164..179
score: 73.92
coord: 132..155
score: 65.79
coord: 250..260
score: 57.34
IPR003084Histone deacetylasePRINTSPR01271HISDACETLASEcoord: 58..76
score: 58.91
coord: 89..106
score: 60.47
coord: 25..42
score: 64.32
coord: 228..246
score: 51.42
coord: 151..167
score: 82.81
coord: 110..130
score: 56.41
coord: 211..224
score: 62.09
IPR003084Histone deacetylasePIRSFPIRSF037913HDAC_I_eukcoord: 1..453
e-value: 5.0E-201
score: 666.5
IPR023801Histone deacetylase domainGENE3D3.40.800.20coord: 3..378
e-value: 1.5E-120
score: 402.1
IPR023801Histone deacetylase domainPFAMPF00850Hist_deacetylcoord: 23..314
e-value: 9.6E-81
score: 271.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..454
NoneNo IPR availableSUPERFAMILY52768Arginase/deacetylasecoord: 5..362

Blast
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BLAST of TCONS_00023841-protein vs. Swiss-Prot (Human)
Match: HDAC3 (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 291/419 (69.45%), Postives = 347/419 (82.82%), Query Frame = 0 
Query:    6 VAYFYEPDVGNFHYGVGHPMKPHRLSLTHNLVFNYNLHKKMDIFRPYQATAYDMTRFHSEDYIHFLQRITPTNKAGFASSFHKFSVGDDSPIFPGLFNFCSMYTGASLQGAVMLNNKLCDIAVNWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHARVLYIDIDIHHGDGVQEAFYFTDRVMTVSFHKYGNFFFPGTGDMYELGDETGKYYSLNVPLHDGIDDQTYIALFKPVIQGVMQKYQPTAIVLQCGADSLAHDRLGCFSLSIKGHGECVNFVKSFGVPLLVLGGGGYTIRNVSRCWTYETALLVNEPVDEKIPITTDYYGFFAPDYQLCPAMSGNFSNQNSKSYVDSIRQTVFDHLKFVQSAPSVQMQDTPPDIFSFEPDNEDDNLDERLET--GKREANNEFYNGEHDVDK 422
            VAYFY+PDVGNFHYG GHPMKPHRL+LTH+LV +Y L+KKM +F+PYQA+ +DM RFHSEDYI FLQR++PTN  GF  S + F+VGDD P+FPGLF FCS YTGASLQGA  LNNK+CDIA+NW+GGLHHAKKFEASGFCYVNDIVI ILELLKYH RVLYIDIDIHHGDGVQEAFY TDRVMTVSFHKYGN+FFPGTGDMYE+G E+G+YY LNVPL DGIDDQ+Y  LF+PVI  V+  YQPT IVLQCGADSL  DRLGCF+LSI+GHGECV +VKSF +PLLVLGGGGYT+RNV+RCWTYET+LLV E + E++P  ++Y+ +FAPD+ L P +S    NQNS+ Y+D IRQT+F++LK +  APSVQ+ D P D+ +++  +E D  +   E    + EA NEFY+G+HD DK
Sbjct:    5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPY-SEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDNDK 422
The following BLAST results are available for this feature:
BLAST of TCONS_00023841-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC30.000e+069.45Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
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