TCONS_00024060-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024060-protein
Unique NameTCONS_00024060-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024060-protein ID=TCONS_00024060-protein|Name=TCONS_00024060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MECKHLDVAVDISPGFVRRLVEDNTNLWVCAECRSNKSPWMCLKCGMVLC
GRYVSGHCKSHGESNPNHVVCIDGSLMVFCYKCDDYVINDTSEGTVQLIR
SALQTELPKRQRKKRQQDQPINGGTPTKKKNSSKENIYPSSPQKLKTVGL
RNLGNTCFMNAILQSLSNLKHFSCYFKELPAIELNGKSNDEAMRKYYTRS
YQSDDISLVEELRKVLCALWQGATAAIAPDSLFTVIWKVVPRFRGYQQHD
AHEFMHYLLDRVHTELLQTKHYSLSKETIISGIFGGQLRSDVTCLKCGNV
SKKEEAFLDLSLDIPLRAHHSKNSAANKNHKNQSKVCHLTDCLQRFVEVE
NLDASEWYTCNNCKKRQPSTKKFWILQLPNVLCLHLKRFRYNQHGRTKVD
TFVKFPVQELNMNSYLLKLPGQKSHRMSTKAHIYDLAAVVVHHGSGAGSG
HYTTYARHEGSWYNFNDSTVSVTNEDTITRCKGYILFYTRQYPNVAVIES
IKDRARAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013511XLOC_013511Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024060TCONS_00024060Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 29..78
e-value: 0.0088
score: 22.6
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 30..90
e-value: 2.3E-16
score: 59.7
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 28..89
score: 15.715
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..113
e-value: 8.1E-21
score: 73.6
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 148..488
e-value: 5.3E-61
score: 206.2
NoneNo IPR availableGENE3D3.90.70.10coord: 140..492
e-value: 2.0E-103
score: 345.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..141
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..98
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 148..490
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 149..164
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 434..452
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 148..491
score: 65.109

Blast
[Close]
BLAST of TCONS_00024060-protein vs. Swiss-Prot (Human)
Match: UBP3 (Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2)

HSP 1 Score: 457.603 bits (1176), Expect = 2.183e-157
Identity = 256/533 (48.03%), Postives = 331/533 (62.10%), Query Frame = 0 
Query:    1 MECKHLDVAVDISPGFVRRLVEDNTNLWVCAECRSNKSPWMCLKCGMVLCGRYVSGHCKSHGES---------------NPNHVVCID-GSLMVFCYKCDDYVINDTSEGTVQLIRSALQ----TELPKRQRKKRQQDQPINGGTPTKKKNSSKENIYPSSPQKLKTVGLRNLGNTCFMNAILQSLSNLKHFSCYFKELPAIEL-NGKSNDEAMRKYYTRSYQSDDISLVEELRKVLCALWQGATAAIAPDSLFTVIWKVVPRFRGYQQHDAHEFMHYLLDRVHTEL-----------LQTKHYSLSKE---------TIISGIFGGQLRSDVTCLKCGNVSKKEEAFLDLSLDIP--LRAHHSKNSAANKNHKNQSKVCHLTDCLQRFVEVENLDASEWYTCNNCKKRQPSTKKFWILQLPNVLCLHLKRFRYNQHGRTKVDTFVKFPVQELNMNSYLLKLPGQKSHRMSTKAHIYDLAAVVVHHGSGAGSGHYTTYARHEGSWYNFNDSTVSVTNEDTITRCKGYILFYTR 490
            MEC HL  +V I+P   +     + + W C+ CRSNKSPW+CL C  V CGRYV+GH K H E                   H VC+D  S   +CY+CDD+V+NDT  G VQ +R  LQ    +     + KKR+  +     +   K N S   I  +        GLRNLGNTCFMNAILQSLSN++ F CYFKELPA+EL NGK+     R Y+TRS   +++SLVEE RK LCALWQG+  A +P+SLF V+WK++P FRGYQQ DAHEFM YLLD +H EL           +  ++ +LS           T+++ IFGG L+++V CL CG  S+K + FLDLSLDIP   R+  SKN       +    VC L DCL+ F ++E LD +E Y C+ CKK+Q STKKFWI +LP VLCLHLKRF +  + R KVDT+V+FP++ L+M  YLL     +      ++ +YDLAAVVVHHGSG GSGHYT YA HEG W++FNDSTV++T+E+T+ + K YILFY  
Sbjct:    1 MECPHLSSSVCIAPDSAK-FPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQNLENSAFTADRHKKRKLLENSTLNSKLLKVNGSTTAICAT--------GLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKT--AGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKN-------QENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLL-----EPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYVE 510
The following BLAST results are available for this feature:
BLAST of TCONS_00024060-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP32.183e-15748.03Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sa... [more]
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