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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024060 ID=TCONS_00024060|Name=TCONS_00024060|organism=Clytia hemisphaerica|type=transcript|length=1633bpRun BLAST on NCBI protein sequence of TCONS_00024060-protein >TCONS_00024060-protein ID=TCONS_00024060-protein|Name=TCONS_00024060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp MECKHLDVAVDISPGFVRRLVEDNTNLWVCAECRSNKSPWMCLKCGMVLCRun BLAST on NCBI transcript from alignment at sc0000471:181790..197437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024060 ID=TCONS_00024060|Name=TCONS_00024060|organism=Clytia hemisphaerica|type=transcript|length=15648bp|location=Sequence derived from alignment at sc0000471:181790..197437- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000471:181790..197437- >TCONS_00024060 ID=TCONS_00024060|Name=TCONS_00024060|organism=Clytia hemisphaerica|type=CDS|length=24432bp|location=Sequence derived from alignment at sc0000471:181790..197437- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024060 vs. Swiss-Prot (Human)
Match: UBP3 (Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2) HSP 1 Score: 407.912 bits (1047), Expect = 1.035e-135 Identity = 250/528 (47.35%), Postives = 325/528 (61.55%), Query Frame = 3
Query: 54 MECKHLDVAVDISPGFVRRLVEDNTNLWVCAECRSNKSPWMCLKCGMVLCGRYVSGHCKSHGESNP---------------NHVVCID-GSLMVFCYKCDDYVINDTSEGTVQLIRSALQTELPXXXXXXXXXDQPINGGTPTKKKNSSKENIYPSSPQKLKTVGLRNLGNTCFMNAILQSLSNLKHFSCYFKELPAIEL-NGKSNDEAMRKYYTRSYQSDDISLVEELRKVLCALWQGATAAIAPDSLFTVIWKVVPRFRGYQQHDAHEFMHYLLDRVHTEL-----------LQTKHYSLSKE---------TIISGIFGGQLRSDVTCLKCGNVSKKEEAFLDLSLDIPLRXXXXXXXXXXXXXXXXXXVCHLTDCLQRFVEVENLDASEWYTCNNCKKRQPSTKKFWILQLPNVLCLHLKRFRYNQHGRTKVDTFVKFPVQELNMNSYLLKLPGQKSHRMSTKAHIYDLXXXXXXXXXXXXXXXYTTYARHEGSWYNFNDSTVSVTNEDTITRCKGYILFYTRQ 1526
MEC HL +V I+P + + + W C+ CRSNKSPW+CL C V CGRYV+GH K H E H VC+D S +CY+CDD+V+NDT G VQ +R LQ + D+ +SK S + GLRNLGNTCFMNAILQSLSN++ F CYFKELPA+EL NGK+ R Y+TRS +++SLVEE RK LCALWQG+ A +P+SLF V+WK++P FRGYQQ DAHEFM YLLD +H EL + ++ +LS T+++ IFGG L+++V CL CG S+K + FLDLSLDIP S+ + ++ VC L DCL+ F ++E LD +E Y C+ CKK+Q STKKFWI +LP VLCLHLKRF + + R KVDT+V+FP++ L+M YLL + ++ +YDLAAVVVHHGSG GSGHYT YA HEG W++FNDSTV++T+E+T+ + K YILFY
Sbjct: 1 MECPHLSSSVCIAPDSAK-FPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQN----LENSAFTADRHKKRKLLENSTLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKT--AGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIP-----SQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLL-----EPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYVEH 511 The following BLAST results are available for this feature:
BLAST of TCONS_00024060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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