TCONS_00024081-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00024081-protein
Unique Name	TCONS_00024081-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	588

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00024081-protein ID=TCONS_00024081-protein|Name=TCONS_00024081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MDVKVQNPVSLAQDFIKKENGSTSVYKEISSLIKSVLDERPLTSTDLVEN
ILSNKSLTEEKEKSNDYLPISTLPDSQIKLFEKTDSEDTFGENVAGGPDT
EEEFEVPLPNCTQLDFYFEQAGIGLGREENYRIFLALKQLIFTQQLGTIR
FWGKIFGLEKNYIIAEGEFREGEGEEEENEEEEEEAQVAQSPDNFLIKAL
LNIIKPHPYNVNKLKDDVIYETGHNNVTKGCRKQRCTKCGLRKQNRLHTP
NILTLEEEPSKDDLTDNENDEPLEDANIPKSTWKPPPEVPKEEFRSGVNK
KVYFVCNEVGEEWTKLPQLTPKEINAARSITKFFTGRLDAKVETYPPFEG
TEANFLRAQIARISAGTQVSPAGYYAFDDEDEDEEDEEGRTSYMINQDFE
GVSLKELSDPGMIAWVHHTQHILPQGRCSWFDINQKPEDDFDVESFDDDE
DLDNEDKPETGPSLLSSTVDDEAIGADMPAWSVSLSSRVLPEYSVAVAKS
NRWPGAYAFATPRKFENVYIGWGNKYTGRCFNPVQAPIAFEEYPDNNDVI
EQNDPTVEEEKALEERERELRAVEEMNDEDEEDDEDDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013527	XLOC_013527	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00024081	TCONS_00024081	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006802	Radial_spoke

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	COILS	Coil	Coil	coord: 556..583
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 546..588
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 439..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..292
IPR006802	Radial spokehead-like protein	PFAM	PF04712	Radial_spoke	coord: 13..566 e-value: 2.6E-158 score: 527.9

Blast

[Close]

BLAST of TCONS_00024081-protein vs. Swiss-Prot (Human)
Match: RSH6A (Radial spoke head protein 6 homolog A OS=Homo sapiens GN=RSPH6A PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.017e-93
Identity = 162/296 (54.73%), Postives = 206/296 (69.59%), Query Frame = 0

Query:  278 IPKSTWKPPPEVPKEEFRSGVNKKVYFVCNEVGEEWTKLPQLTPKEINAARSITKFFTGRLDAKVETYPPFEGTEANFLRAQIARISAGTQVSPAGYYAFD--DEDEDEEDEEGRTSYMINQDFEGVSLKELSDPGMIAWVHHTQHILPQGRCSWFDINQKPEDDFDVESFDDDEDLDNED-KPETGPSLLSSTVDDEAIGADMPAWSVSLSSRVLPEYSVAVAKSNRWPGAYAFATPRKFENVYIGWGNKYTGRCFNP-VQAPIAFEEYPDNNDVIEQNDPTVEEEKALEERERE 569
            +PKS WKPPP +PKEE RSG NK +YFVCNE G  WT+LP +TP +I  AR I KFFTG LD  V +YPPF G EAN+LRAQIARISA TQVSP G+Y F   + DE+EE   GR SY  N DFEG+ + EL D  M  WVHHTQHILPQGRC+W +  QK E++ D+   ++  D   E+ + E GP LL+   +D  I    P W+  LS  + P+YSVAV +SN WPGAYA+A+ +KFEN+YIGWG+KY+   FNP + API  +EYP   +++E +DPTVEEE+AL+  + +
Sbjct:  403 VPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVD-SMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAP-WTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPALPAPIQ-QEYPSGPEIMEMSDPTVEEEQALKAAQEQ 695

HSP 2 Score: 86.2705 bits (212), Expect = 1.413e-17
Identity = 57/173 (32.95%), Postives = 94/173 (54.34%), Query Frame = 0

Query:    1 MDVKVQNPVS-LAQDFIKKENGSTSVYKEISSLIKSVLDERPLTSTDLVENILSNKSLTEEKEKSNDYL-------PISTLPDSQIKLFEKTDSEDTFGENVAGGPDTEEEFEVPLPNCTQLDFYFEQAGIGLGREENYRIFLALKQLIFTQQLGTIRFWGKIFGLEKNYIIA 165
            +++ VQN  + L Q  I   N   S+Y+ + +L+  +L++RP     ++E+ L+  +  E      D L       P   + + Q  LF ++       +        EE  E P+PN  +  FYFEQAG+GL  +E++RIFLA+KQL+  Q + T RFWGKI G++++Y++A
Sbjct:  195 LELAVQNAKAYLLQTSI---NCDLSLYEHLVNLLTKILNQRPEDPLSVLES-LNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQE-----MEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVA 358

The following BLAST results are available for this feature:

BLAST of TCONS_00024081-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00024081-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RSH6A	1.017e-93	54.73	Radial spoke head protein 6 homolog A OS=Homo sapi...	[more]

You are here

TCONS_00024081-protein (polypeptide) - C. hemisphaerica