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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024081 ID=TCONS_00024081|Name=TCONS_00024081|organism=Clytia hemisphaerica|type=transcript|length=2462bpRun BLAST on NCBI protein sequence of TCONS_00024081-protein >TCONS_00024081-protein ID=TCONS_00024081-protein|Name=TCONS_00024081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp MDVKVQNPVSLAQDFIKKENGSTSVYKEISSLIKSVLDERPLTSTDLVENRun BLAST on NCBI transcript from alignment at sc0000474:46969..59614- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024081 ID=TCONS_00024081|Name=TCONS_00024081|organism=Clytia hemisphaerica|type=transcript|length=12646bp|location=Sequence derived from alignment at sc0000474:46969..59614- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000474:46969..59614- >TCONS_00024081 ID=TCONS_00024081|Name=TCONS_00024081|organism=Clytia hemisphaerica|type=CDS|length=28272bp|location=Sequence derived from alignment at sc0000474:46969..59614- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024081 vs. Swiss-Prot (Human)
Match: RSH6A (Radial spoke head protein 6 homolog A OS=Homo sapiens GN=RSPH6A PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 5.164e-82 Identity = 156/283 (55.12%), Postives = 195/283 (68.90%), Query Frame = 3
Query: 909 IPKSTWKPPPEVPKEEFRSGVNKKVYFVCNEVGEEWTKLPQLTPKEINAARSITKFFTGRLDAKVETYPPFEGTEANFLRAQIARISAGTQVSPAGYYAFX--XXXXXXXXXXGRTSYMINQDFEGVSLKELSDPGMIAWVHHTQHILPQGRCSWFDINQKPXXXXXXXXXXXXXXX-XXXXKPETGPSLLSSTVDDEAIGADMPAWSVSLSSRVLPEYSVAVAKSNRWPGAYAFATPRKFENVYIGWGNKYTGRCFNP-VQAPIAFEEYPDNNDVIEQNDPT 1745
+PKS WKPPP +PKEE RSG NK +YFVCNE G WT+LP +TP +I AR I KFFTG LD V +YPPF G EAN+LRAQIARISA TQVSP G+Y F + DE+EE GR SY N DFEG+ + EL D M WVHHTQHILPQGRC+W + QK E++ D+ ++ D E + E GP LL+ +D I P W+ LS + P+YSVAV +SN WPGAYA+A+ +KFEN+YIGWG+KY+ FNP + API +EYP +++E +DPT
Sbjct: 403 VPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVD-SMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAP-WTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPALPAPIQ-QEYPSGPEIMEMSDPT 682 HSP 2 Score: 85.8853 bits (211), Expect = 3.791e-17 Identity = 58/175 (33.14%), Postives = 96/175 (54.86%), Query Frame = 3
Query: 72 EKMDVKVQNPVS-LAQDFIKKENGSTSVYKEISSLIKSVLDERPLTSTDLVENILSNKSLTEEKEKSNDYL-------PISTLPDSQIKLFEKTDSEDTFGENVAGGPDTEEEFEVPLPNCTQLDFYFEQAGIGLGREENYRIFLALKQLIFTQQLGTIRFWGKIFGLEKNYIIA 572
E +++ VQN + L Q I N S+Y+ + +L+ +L++RP ++E+ L+ + E D L P + + Q LF ++ + + EE E P+PN + FYFEQAG+GL +E++RIFLA+KQL+ Q + T RFWGKI G++++Y++A
Sbjct: 193 EPLELAVQNAKAYLLQTSI---NCDLSLYEHLVNLLTKILNQRPEDPLSVLES-LNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQEM-----EEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVA 358 The following BLAST results are available for this feature:
BLAST of TCONS_00024081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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