TCONS_00024235-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024235-protein
Unique NameTCONS_00024235-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024235-protein ID=TCONS_00024235-protein|Name=TCONS_00024235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
NYVKHIATDHVIDDEHHPIIGSPVQHPTTLYESDHYIPGKDTNGLNEDLD
GHLHLGDETNVQHHTHHVVTVKSEAEKQKMVHGLVDLDKDKCVSLQIIND
IGRRYRLVSSINKHGYTPRGQLFTLKTVFKDPSAHKLVLFKAIDELEPGK
EILIDGKDKFVAFPTSCNGEPKTVHVTRMGQRPSVVGCGSSAGKDCVMKK
SVILSKLRDAHAFKKFRQQQAINFVNTKRSKIEQAKKGCSQYAYNAHNPT
TKSCCVFPFMFGGKPHSQCIKSGARAWCGTTDSVDRDKRWGLCIPSPKAK
IQNRPAQQNFQQQQQQLQPQQSVAPQKQHFAPQQNAQQSTQHFYNQQQQP
QQQQDIKQFVGSIQQQYQQKQLQQLIQQTRSQHQQEQQIKQFTAPQQTYQ
QKQPQQFFHPTQPQEQQNIKQFATVPQQTEQQFYQHPEIQAAQQFVQNRQ
QQPPNYAAMADD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013603XLOC_013603Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024235TCONS_00024235Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000562FN_type2_col-bd
IPR013806Kringle-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00013FNTYPEIIcoord: 252..261
score: 50.0
coord: 263..275
score: 28.72
coord: 277..292
score: 48.75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..351
IPR000562Fibronectin, type II, collagen-bindingSMARTSM00059FN2_2coord: 244..293
e-value: 1.4E-6
score: 35.6
IPR000562Fibronectin, type II, collagen-bindingGENE3D2.10.10.10coord: 253..293
e-value: 2.3E-12
score: 46.3
IPR000562Fibronectin, type II, collagen-bindingPFAMPF00040fn2coord: 255..293
e-value: 8.9E-14
score: 51.4
IPR000562Fibronectin, type II, collagen-bindingPROSITEPS51092FN2_2coord: 250..295
score: 15.69
IPR000562Fibronectin, type II, collagen-bindingCDDcd00062FN2coord: 255..293
e-value: 4.6658E-11
score: 57.3154
IPR013806Kringle-like foldSUPERFAMILY57440Kringle-likecoord: 248..294

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024235-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top