TCONS_00024563-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024563-protein
Unique NameTCONS_00024563-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024563-protein ID=TCONS_00024563-protein|Name=TCONS_00024563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MVEEKPTASTAKVPSEKDLEEVAELMSVGKRHLICNEPEKALDYFVELCE
RLAEFYGQTADECADAYLHYGKTLLGLARQEIGVFWNAVKEAPVLQEEEE
TEEEGEDQGEVMETETKSGDKDDEKTEQKQDTEDEEEALKPSEIKEQVSH
AMREGNLYNDATTEEETEPEEEESKENGESTTESKETAEKKEGEEQDDDD
CGDQDVSHMELAWEMLELTCSICSRMVTEKRDIEKAEEMLAEAKYGLAQI
SMEQEQYERAIEDFNSCLEHYTKTLDDKLDRRIAEIHYNVGLAFSFDKKF
EEAVTSFKEAKSLLESRLDVLKGKIEKHERESGKGKAPTELLDWNKEMKE
LEDLVLLDMNAKIEDAEESKKQADAELVAMKEKTKDLFGALSSATGFETG
FGFDESTPTTEVKVHDATTNVRKGSVKRPSDDEGVSDAKKAKTVDQNSNN
ETATAGEKTNGVAHNDEKPTSVGA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013793XLOC_013793Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024563TCONS_00024563Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR019544Tetratricopeptide_SHNi-TPR_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 356..383
NoneNo IPR availableCOILSCoilCoilcoord: 311..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..474
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 241..274
e-value: 0.0077
score: 25.4
coord: 284..317
e-value: 1.1
score: 18.3
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 284..313
e-value: 0.19
score: 12.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 241..274
score: 8.142
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 284..317
score: 8.614
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 2..92
e-value: 0.035
score: 13.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 223..259
e-value: 0.0015
score: 18.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 260..391
e-value: 1.4E-8
score: 34.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 230..323
coord: 18..59
IPR019544Tetratricopeptide, SHNi-TPR domainPFAMPF10516SHNi-TPRcoord: 247..275
e-value: 6.5E-6
score: 25.4
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 241..317
score: 10.945

Blast
[Close]
BLAST of TCONS_00024563-protein vs. Swiss-Prot (Human)
Match: NASP (Nuclear autoantigenic sperm protein OS=Homo sapiens GN=NASP PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.684e-25
Identity = 75/253 (29.64%), Postives = 142/253 (56.13%), Query Frame = 0 
Query:  203 DQDVSHMELAWEMLELTCSICSRMVTEKRDIEKAEEMLAEAKYGLAQISMEQEQYERAIEDFNSCLEHYTKTLDDKLDRRIAEIHYNVGLAFSFDKKFEEAVTSFKEAKSLLESRLDVLKGKIEKHERESGKGKAPTELLDWNKEMKELEDLVLLDMNAKIEDAEESKKQADAELVAMKEKTKDLFGALSSATGFETGFGFDEST------PTTEVKVHDATTNV-------RKGSVKRPSDDEGVSDAKKAK 442
            ++++ ++ELAW+ML+L     ++++ ++++ ++A+   A+A   L ++S+E E Y +A+E+F SCL    + L+   DR +AE HY +GLA+ ++ +++EAV  F ++  ++E+R+ VL  ++++ E  S          ++ KE++EL++L L ++  KIEDA+ES++  +   +A+K    +     SS +GF  G G    +      PT      +  T++       RK   + P  D    DAKKAK
Sbjct:  509 EEEIGNLELAWDMLDL-----AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH-DRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSA---------EYKKEIEELKEL-LPEIREKIEDAKESQRSGNVAELALKATLVE-----SSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKD----DAKKAK 736
The following BLAST results are available for this feature:
BLAST of TCONS_00024563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NASP3.684e-2529.64Nuclear autoantigenic sperm protein OS=Homo sapien... [more]
back to top