TCONS_00024670-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024670-protein
Unique NameTCONS_00024670-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024670-protein ID=TCONS_00024670-protein|Name=TCONS_00024670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp
MEIEASSPLKRVSPNKEMAEETLVEGQRKKKKKKLMSKTQFSLPQEKLIS
PALKGSSNKETKEPVKTKKKQQASSSNLNSRPNTFTVLQNLENSKKTTSQ
ETVTVISSSKQSRNIDNADISKAYTSFIEDNVLPNKVKEKIISSSPAASI
IHEEPKVERRRSKRLTELRRSSIDFKVTKKFRKLKAEAEKSVQPALTEDR
VPEEFSLTNDEPMDLNLSFVHDENEGLICTSQNSGTIIRIDDLPSDAIQT
PDNDVECEIPLGEKNDEEAPREMETTTGEIDSGISDSEEINDDEVFPPHN
EEPKITQPPHVKKSTKRSNISSKSKSITSVVSPKKKTSTSNRSINTTSNR
SFNTTSNRSINTTSNQSINRTLNRTSSSKKFKNSIVCTSLHFSEQDFAKG
AIKNLKEYQLKKNVAPDTSHVIAGSGRRTLNILHGITQGCWILSPKWISD
SYEAGCWLAEEDYEMHKDFPAAKVSRLNHQRYGKSHCGRLFAKVPRIYLA
EVTSPPHEELMKLIISCGGQLTNAVRKAGLAIGFINCRRHESLKIISEKW
ILDTITNGRLMALDKYLITIPYQRATSPDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013845XLOC_013845Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024670TCONS_00024670Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 378..455
e-value: 8.0E-4
score: 28.7
coord: 488..558
e-value: 25.0
score: 8.7
IPR001357BRCT domainGENE3D3.40.50.10190coord: 382..478
e-value: 4.9E-16
score: 58.3
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 496..567
e-value: 5.2E-7
score: 29.9
IPR001357BRCT domainGENE3D3.40.50.10190coord: 480..567
e-value: 4.8E-10
score: 39.1
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 409..465
score: 10.001
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 486..568
score: 11.837
IPR001357BRCT domainCDDcd00027BRCTcoord: 384..453
e-value: 9.16547E-4
score: 36.5307
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 411..469
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 496..569
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..375

Blast
[Close]
BLAST of TCONS_00024670-protein vs. Swiss-Prot (Human)
Match: MCPH1 (Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=4)

HSP 1 Score: 146.362 bits (368), Expect = 7.313e-37
Identity = 68/198 (34.34%), Postives = 118/198 (59.60%), Query Frame = 0 
Query:  372 LNRTSSSKKFKNSIVCTSLHFSEQDFAKGAIKNLKEYQLKKNVAPDTSHVIAGSGRRTLNILHGITQGCWILSPKWISDSYEAGCWLAEEDYEMHKDFPAAKVSRLNHQRYGKSHCGRLFAKVPRIYLAEVTSPPHEELMKLIISCGGQLTNAVRKAGLAIGFINCRRHESLKIISEKWILDTITNGRLMALDKYLIT 569
            L ++   KK   ++V TS+   +Q+     +  LK + +  +V   T+HV++G   RTLN+L GI +GCW+LS  W+  S E G W++EE +E+   FPAA + R         + G LFA  P ++++  +SPP  +L +L+  CGG+++   R+A + IG  + ++  ++K +SEKW+LD+IT  ++ A + YL++
Sbjct:  637 LKKSGRGKKPTRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPAMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENYLLS 834
The following BLAST results are available for this feature:
BLAST of TCONS_00024670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCPH17.313e-3734.34Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=4[more]
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