TCONS_00024832-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024832-protein
Unique NameTCONS_00024832-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024832-protein ID=TCONS_00024832-protein|Name=TCONS_00024832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1010bp
RDFEEECLRQCEKYTCFFTDTIKMEYPKLINLLIFVVTLLPSLVKTQCPS
KCSCSGDLAYCENQFLTSIPNGFGSSIRRLYLGANFIETINKGDLPDLPG
LEILGLQNNKLTYIQDEAFSGYTSLVQLHLNNNFLRRISNSTFKGLENVI
ILNLHNQLTDNSLFIDDYTFGNMSNLNELNLQNTNLKQITDHTLDGFKRG
ALYLQGQDIHRFSPYAFSGIHNDASIFIDSKTSRLCCCESKMAISDTSLS
LNCIKNDVTFDLRTVECVNDGYCQNTSKTTCSSLEILTESLTIVEESYTI
SSKAKASELVSTFSHTTSAIQRLSSVSSSISTNTQRNIIPTSSKNTMLTS
LQKISLPKYPESFSPRSSVLIAFDQHQSSVLTIHSSLNSMETSSLPKPAT
TTATTHQNVKFHSSNLPTPSLYIRTKDDIIRSFSSLGNNFQHSKYLANNQ
ISSHSTHLSTSAHLQDFQSYTTDLNFAQISGSPTAFNALSNQETRIRTSI
IDSSTLPIDQISSHLNKTVTASVKTSKLGLPIIQSFTSKDSVIKISSKHS
QTDMFLSPTLVSEKTEKQTHLPMKSSLLSLNQTSNSITMNVSFNTENHLT
EDTEINNNGETKRIVLSPSSTIFTLPITPSSLSSQILDQVLPSSSFVKED
TTSASSASQNNGALPTPILESSFSFIKENTILATFPLHFLTSIETERSPT
KLLSSNPPNENEDLDTRSKIIGEQIIISSKIKLTSDATPSLNKLDEDYSE
ISSIKGLFIQRSRIGSSSENLVATPSQQPSISISIIRNQEPQNRISEDRS
GATLKPRQSSSDIELSTIQENPRLLSQTISTNLRDQSSVISPSGGYLLKS
SPMSTNTSTLSINQVYQQSQQLPVISNAPNSSTADHELSKYSTMYRRQIL
NKTIISLESISINSSSIESTANQDQLSRTPTIAQTTVQRQTERFTEQPTK
KPAQQDVKAGFSQQPADDENDTNILLGVFLTFGAFGLLIGILVMYKKRRS
ILSQSVDLRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013957XLOC_013957Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024832TCONS_00024832Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 173..196
e-value: 8.1
score: 14.0
coord: 122..145
e-value: 7.2
score: 14.4
coord: 98..121
e-value: 0.0022
score: 27.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 47..972
e-value: 1.5E-29
score: 102.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 47..222
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 76..133
e-value: 7.4E-10
score: 38.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 788..813
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 918..966

Blast
[Close]
BLAST of TCONS_00024832-protein vs. Swiss-Prot (Human)
Match: LRR70 (Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.186e-16
Identity = 64/186 (34.41%), Postives = 90/186 (48.39%), Query Frame = 0 
Query:   48 CPSKCS-CSGDLAYCENQFLTSIPNGFGSSIRRLYLGANFIETINKGDLPDLPGLEILGLQNNKLTYIQDEAFSGYTSLVQLHLNNNFLRRISNSTFKGLENVIILNL-HNQLTDNSLFIDDYTFGNMSNLNELNLQNTNLKQITDHTLDGF-KRGALYLQGQDIHRFSPYAFSGIHNDASIFIDS 230
            C S C  C+G    C N  L+SIP  F  S   LYL  N I  IN+ +L  L  L  L L N+ + Y+  +AF     L  L LNNNF++R+    FKGL N+  L L +NQ++    F+    F ++ ++  LNLQ   L  +   T  G      L L   +I R S   F  + N A +++ S
Sbjct:   32 CSSVCQLCTGRQINCRNLGLSSIPKNFPESTVFLYLTGNNISYINESELTGLHSLVALYLDNSNILYVYPKAFVQLRHLYFLFLNNNFIKRLDPGIFKGLLNLRNLYLQYNQVS----FVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALRILDLSNNNILRISESGFQHLENLACLYLGS 213
The following BLAST results are available for this feature:
BLAST of TCONS_00024832-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRR705.186e-1634.41Leucine-rich repeat-containing protein 70 OS=Homo ... [more]
back to top