TCONS_00025037-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00025037-protein
Unique Name	TCONS_00025037-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2548

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00025037-protein ID=TCONS_00025037-protein|Name=TCONS_00025037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2548bp
TFLWRIQYSIYSFPSGKCLSIQNYKDMPSKFSLRIIDADYYIAKPKANID
VSYSNCRQRDVYKVPVIRIFGTTPQGQKACLHVHNVFPYFYVLVPEDEIL
PVEFGKKFASSLDIAIHLALGKAASNQQEYVYAYEVVHKIPFYGYHHKTK
IFLRVYLFNPGLITKVSELLVNASVLNQFFQPFETHIPFLLQFFIDYNLQ
GMNLINLSNAMFRLPLPMPQGDMNTTFRGLRSPTTSFCTSPSPKVSQTNY
DIFNSDTVPSTSILPGDITKQSCCQLECDALGNHILNIEGTKDNNGFNPG
LQSIWNDEKQRRRLNNESSFIEMPSSGSRNEYEITIDEKEQLNRLEMVLR
ERVNTMGEMSSIDLSFSQPDRLNCSTNDSITSSNDQSLLDILVDMANVKE
NEEGEEEINPTPLSETTFINNGLSDKEDEEGNVTEEENETLLMSQTVFGE
HVTHVDSEEKKEHEKNANDLQQYQEPNDSWTESFIDDLPQQHVDDNDQPT
CSKYNQYIPQFDSNMDYGFSEDKMTNSGNCGTVSSVNKGRISLKAEKRHK
HIPQFDGNGDSDSSSADDFKPNVSSFASKSSSKKRGKKKKVKRGQLQFGR
NSGAASSGVTGCSAWTVTPLPSCKAENALPGGFGSSSKKDVTTVSSSTTI
SIPVVKPTKQLQQQKRKSEALPTFVEEAAYRYPKRKRNDNVNYNFEVSKE
CCIKFVDEHDTLQIVDYSHIFDSDQDDRHAHSTCSRTDRLPMSYYREKYN
LKDCKVVLEDIGTMNDISIKSRTPKRTPGKLKMKFRKDTRGDFYIKHSPS
VTPPNNTSKISRIRSESGLLSGAKPSLLFTTNTHESIKEESFTSIIPRDE
FKVELQDLTFLTNVANDVDDEFNQYQDVLDRMAFRSPITKRRQSFTSDNN
DKEDNESLPDCFAMSPCYSDVSEEYEFAETISEIPESPSEQETEDDCEAL
PELSTYGTPTKVHPYQTPKRLTNLKVNKALDFASGDDIGNVGNTEIEDIF
TRHEETSSSTIVFETPLDDGSVNTDVGKDLICNTIAPESLKNLKHIDKGD
NTKEMKDSLGSEKIDSNETVLAANDHLSTNEIEEAYVKKTLSYSMDIDNQ
DMVEKEEPVDDQQESSASSITTSIVDNEPECTVITGLSSSIPDNENDKVK
TQQHMASSEETLGRNSNDNNAFQTVKLKRTYQERRTEEEKRNISQTNIEF
GEDQTIDKDSGERNSPPCFESTDKDDVSVGTRKTLFSRERXCFESTDKDD
ASVETKKTLFSRERYNFLIRFDSDDSSVSKSIKSPGSLDKDVLSPDAFPM
QQNEPVDSDHHQRESDLLSPLIFEKSSFLYDNKTSNSGHSYEASSDDRAI
DETNKENQEDGQKASVNGDSDLSNKEEDDCSSSVGSPILPRFVDSQEYET
IKSFQQPRRVDLDDSSVTDSHSGSSTHSSGDSTVKASSLNDSENSPQDLS
LKSPETSLKDFARSNLGENSTKSFEFAKPKDFREQMIIVQPKKCPPSRHE
VSDSLSQHNLSETQNVDAFFSCDKDLADKASAFHGQHAVRCNAKTSNLPK
CVGVTPSNGAIEHFQMKQIEKLGLWDNSLQGVSNQSRIRSINDFLYGNET
ITIEPCKQPPSLSKVQAWIDERQKKRKKKKRKIEAKKTDIASSFIPQFVS
PFTNQKNSNKTTDVAKNKNEVSFSVDRIMNQSDIEGMTPNNTYSFDHTQA
NLNDAKALHINQHLIVISVEIFCKTRRNLKPDPQIDPIDAIFYSVCRDVT
KVTDDASDQSGVFLFDAEHEKGETDVNELFRKTGFVITQRHIFKQEKDML
LEFASFIRELDPDIIMGYEVQMMSWGYVIERGAVLDLNMCHLLSRIMEKD
ALPRGASAGGGKPDNWFGQLVNMTITGRIILNVWRVMRSEITLQIYSFEN
VAYHVLHRRIPFFTHQVLTDWWKKDQSRWRVCQYYLTRCQGNLQLLNSID
FINRTSELARVFGILFYAVISRGSQFRVESMMIRTAKPLNYVPVSPTVQQ
RAKMAAPECIPLVLEPESKFYADPVIVLDFQSLYPSIIIAYNYCYSTCLG
KLSSFSANENYRFGATSLNLPLKVLNKLSKDKLMHVSPNGVGFVTANVKR
GILPRMLEDILNTRIMVKGAMKKAKEDKVLHRMLDSRQLGLKLIANVTYG
YTSANFSGRMPCIEIGDSVVRKARETLERAIHLVNTTAKWNAKVVYGDTD
SMFILVKGATKERAFEIGQQIVNEVTAANPKPVKLKFEKVYQPCVLITKK
RYVGYSYETLDQNEPIFDAKGIETVLRDNCPAVEKLMEKSIRILFETKDV
SLIKSYVQKQLMKILEGKTYLKEFIIAKEYRDMNTYKPGACVPALVLTRK
MLKQDRRSEPRTGQRVPYVVIHGSPGLPLIQLVRPPQDLVDNSGLRINDV
YYITKQILPALSRIFSLLGVNVNKWYTDLPKMNRIHDRDIDHSTNKKGTI
SHYFGSQHCPICQQLTTLRICRSCQQQPQMTVVHLTSRIWNTEKRFINLL
KPLCVKFHVPLVCYWTLSNHQITKVVLKSHSFIFFFYNVATLTLAAKM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_014077	XLOC_014077	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00025037	TCONS_00025037	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006172	DNA-dir_DNA_pol_B
IPR023211	DNA_pol_palm_dom
IPR006134	DNA-dir_DNA_pol_B_multi_dom
IPR012337	RNaseH-like_dom
IPR006133	DNA-dir_DNA_pol_B_exonuc
IPR017964	DNA-dir_DNA_pol_B_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003887	DNA-directed DNA polymerase activity
GO:0003677	DNA binding
GO:0008408	3'-5' exonuclease activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1619..1639
None	No IPR available	GENE3D	3.30.342.10		coord: 52..220 e-value: 5.0E-46 score: 155.9
None	No IPR available	CDD	cd05778	DNA_polB_zeta_exo	coord: 1712..1947 e-value: 3.03318E-73 score: 245.992
None	No IPR available	CDD	cd05534	POLBc_zeta	coord: 1973..2423 e-value: 0.0 score: 801.045
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2012..2429
IPR006172	DNA-directed DNA polymerase, family B	PRINTS	PR00106	DNAPOLB	coord: 2025..2038 score: 59.75 coord: 2138..2150 score: 47.07 coord: 2194..2202 score: 72.14
IPR006172	DNA-directed DNA polymerase, family B	SMART	SM00486	polmehr3	coord: 1712..2208 e-value: 7.5E-105 score: 364.3
IPR023211	DNA polymerase, palm domain	GENE3D	3.90.1600.10		coord: 2013..2274 e-value: 3.9E-66 score: 222.4
IPR006134	DNA-directed DNA polymerase, family B, multifunctional domain	PFAM	PF00136	DNA_pol_B	coord: 1959..2416 e-value: 4.8E-100 score: 335.4
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 1710..1972 e-value: 3.0E-48 score: 163.8
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1785..1971 coord: 56..204 coord: 1712..1749
IPR006133	DNA-directed DNA polymerase, family B, exonuclease domain	PFAM	PF03104	DNA_pol_B_exo1	coord: 1693..1901 e-value: 1.4E-11 score: 44.0 coord: 73..213 e-value: 2.8E-10 score: 39.7
IPR017964	DNA-directed DNA polymerase, family B, conserved site	PROSITE	PS00116	DNA_POLYMERASE_B	coord: 2196..2204

Blast

[Close]

BLAST of TCONS_00025037-protein vs. Swiss-Prot (Human)
Match: REV3L (DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2)

HSP 1 Score: 993.416 bits (2567), Expect = 0.000e+0
Identity = 467/877 (53.25%), Postives = 633/877 (72.18%), Query Frame = 0

Query: 1652 FTNQKNSNKTTD----VAKNKNEVSFSVDRIMNQSDIEGMTPNNTYSFDHTQANLNDAKALHINQHLIVISVEIFCKTRRNLKPDPQIDPIDAIFYSVCRDVTKVTDDASDQSGVFLFDAEHEKGETDV---NELFRKTGFVITQRHIFKQEKDMLLEFASFIRELDPDIIMGYEVQMMSWGYVIERGAVLDLNMCHLLSRIMEKDALPRGASAGGGKPDNWFGQ--LVNMTITGRIILNVWRVMRSEITLQIYSFENVAYHVLHRRIPFFTHQVLTDWW--KKDQSRWRVCQYYLTRCQGNLQLLNSIDFINRTSELARVFGILFYAVISRGSQFRVESMMIRTAKPLNYVPVSPTVQQRAKMAAPECIPLVLEPESKFYADPVIVLDFQSLYPSIIIAYNYCYSTCLGKLSSFSANENYRFGATSLNLPLKVLNKLSKDKLMHVSPNGVGFVTANVKRGILPRMLEDILNTRIMVKGAMKKAKEDKVLHRMLDSRQLGLKLIANVTYGYTSANFSGRMPCIEIGDSVVRKARETLERAIHLVNTTAKWNAKVVYGDTDSMFILVKGATKERAFEIGQQIVNEVTAANPKPVKLKFEKVYQPCVLITKKRYVGYSYETLDQNEPIFDAKGIETVLRDNCPAVEKLMEKSIRILFETKDVSLIKSYVQKQLMKILEGKTYLKEFIIAKEYRDMNTYKPGACVPALVLTRKMLKQDRRSEPRTGQRVPYVVIHGSPGLPLIQLVRPPQDLVDNSGLRINDVYYITKQILPALSRIFSLLGVNVNKWYTDLPKMNRIHDRDIDHSTNKKGTISHYFGSQHCPICQQLTTLRICRSCQQQPQMTVVHLTSRIWNTEKRFINLLKPL-----CVKFHVPLV 2512
             +N+K SN  T     + + KN+ +         S I+G + NNTY F  +  NL +AKALH  Q+L +ISVE+  +TRR+L+PDP+ DPI A+FY +  D      + ++ +GV + D +      D+     L  ++G    +      EK +  E A+ I+  DPDI++GYE+QM SWGY+++R A L +++C ++SR+ +     R A+       + +G   +  + I GRI LN+WR+MR+E+ L  Y+FENV++HVLH+R P FT +VL+DW+  K D  RW++  +Y++R +GNLQ+L  +D I +TSE+AR+FGI F  V++RGSQ+RVESMM+R AKP+NY+PV+P+VQQR++M AP+C+PL++EPES+FY++ V+VLDFQSLYPSI+IAYNYC+STCLG + +    + ++FG TSL +P  +L ++  D  + VSPNGV FV  +V++G+LPRMLE+IL TR MVK +MK  K+D+ L RMLD+RQLGLKLIANVT+GYTSANFSGRMPCIE+GDS+V KARETLERAI LVN T KW A+VVYGDTDSMF+L+KGATKE++F+IGQ+I   VTA NPKPVKLKFEKVY PCVL TKKRYVGY YETLDQ +P+FDAKGIETV RD+CPAV K++E+S+++LFET+D+SLIK YVQ+Q MK+LEGK  +++FI AKEYR   +YKPGACVPAL LTRKML  DRRSEP+ G+RVPYV+I+G+PG+PLIQLVR P +++ +  LR+N  YYITKQILP L+RIFSL+G++V  WY +LP++++           +KGTIS YF + HCP+C  LT   IC  C+ QPQ   V L   I   E++   L+K       C   H+P V
Sbjct: 2231 LSNKKGSNTDTLRRVLLTQAKNQFAAVNTPQKETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITGLEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMISRVPDDKIENRFAAE-----RDEYGSYTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQVRHD--ITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEYRGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHGICSKCRSQPQHVAVILNQEIRELERQQEQLVKICKNCTGCFDRHIPCV 3100

HSP 2 Score: 237.654 bits (605), Expect = 2.883e-62
Identity = 140/345 (40.58%), Postives = 195/345 (56.52%), Query Frame = 0

Query:   31 FSLRIIDADYYIAKPKANIDVSYSNCRQRDVYKVPVIRIFGTTPQGQKACLHVHNVFPYFYVLVPEDEILPVEFGKKFASSLDIAIHLALGKAASNQQEYVYAYEVVHKIPFYGYHHKTKIFLRVYLFNPGLITKVSELLVNASVLNQFFQPFETHIPFLLQFFIDYNLQGMNLINLSNAMFRLPLPMPQGDMNTTFRGLRSPTTSFCTSPSPKVSQTNYDIFNS----------DTVPSTSILPGDITKQSCCQLECDALGNHILNIEGTKDNNGFNPGLQSIWNDEKQRRRLNNESSFIEMPSSGSRNEYEITIDEKEQLNRLEMVLRERVNTMGEMSSIDLS 365
            FS+RI+ ADYY+A P   +D   S   Q  V KVPV+R+FG TP GQK CLH+H +FPY YV        P  +  + A S+D A+++ALG  +S  Q +V+   +V  +PFYGYH K + F+++YL+NP ++ ++ ELL + +++N+F+QP E HIP+LLQ FIDYNL GMNLINL+   FR              +  R   T   T      S  N+   NS          D +PS+ IL G +  QS C+LE DA+   ILN    +   G NPGLQ+IW DEKQRRR  NE+S +  P S        T  EK+   RL+ +L++   ++    S+D S
Sbjct:    2 FSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSIDRALNVALGNPSSTAQ-HVFKVSLVSGMPFYGYHEKERHFMKIYLYNPTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR--------------KARRKSNTLHATG-----SCKNHLSGNSLADTLFRWEQDEIPSSLILEG-VEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQRRRNRNETSQMSQPESQDHRFVPATESEKKFQKRLQEILKQNDFSVTLSGSVDYS 325

The following BLAST results are available for this feature:

BLAST of TCONS_00025037-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00025037-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
REV3L	2.883e-62	53.25	DNA polymerase zeta catalytic subunit OS=Homo sapi...	[more]

You are here

TCONS_00025037-protein (polypeptide) - C. hemisphaerica