TCONS_00025256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025256-protein
Unique NameTCONS_00025256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025256-protein ID=TCONS_00025256-protein|Name=TCONS_00025256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp
MGWIKKTFIFALPILSYYIYKIVKANFLIFVIITSQIYPRLPIKNFAKLN
PDIADFATGDDQIVDEYDFVIIGAGSAGAVVANRLSENKSWKVLLLEAGG
GETMLSEIPATTVLNFNTSIDWSFLSEPANDGKTSTIFKNGQLVMPRGKV
LGGSSTINVMGYTRGNKRDYDLWEEQGNPGWSYEDVLPYFKKSEDQTNEK
LTKDTKYHSTGGYLTIEDVEKADVFVKLMDGFSKILPENKDYNGAKQSGT
VFYQNTIRNGQRCSTAKAYLKPKRSNLHVSPFSHVQKILIDPETKTAEGV
VYKKNGKSMTVKAKKEVILSAGAFGSPQILMLSGVGPKEELEKHGISIIK
ELQVGYNLQDHVNVFSHMIFNESIELPSKEVISFDTFKEYYEQRTGHLRS
NGAGLGMFVPLSEEAKSKDWPEIQSHFLLQLMTDVADTQWIFKYNEEFWN
NVLLRELEGKHGVTYFNCLLRPKSRGRVKLRSNDTQDHPRIIPNYFTHPD
DLNTFIESFKFGKKLAATLPQYNASIVDLKDPACIEYASGSDDYYRCTAV
RGASTLYHPVGTCKMGPHTDDQAVVDSRLKVYGIKGLRVVDASIMPTIVS
GNTNAPTIMIAEKAADMIKEDWKDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014187XLOC_014187Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025256TCONS_00025256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012132GMC_OxRdtase
IPR000172GMC_OxRdtase_N
IPR007867GMC_OxRtase_C
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012132Glucose-methanol-choline oxidoreductasePIRSFPIRSF000137Alcohol_oxidasecoord: 47..625
e-value: 9.4E-157
score: 521.3
NoneNo IPR availableGENE3D3.30.560.10coord: 171..577
e-value: 1.8E-93
score: 312.9
NoneNo IPR availableGENE3D4.10.450.10coord: 101..170
e-value: 3.4E-21
score: 74.2
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 357..562
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 67..362
e-value: 7.4E-71
score: 238.8
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 322..336
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 148..171
IPR007867Glucose-methanol-choline oxidoreductase, C-terminalPFAMPF05199GMC_oxred_Ccoord: 472..614
e-value: 3.3E-40
score: 137.8
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 561..623
coord: 65..355

Blast
[Close]
BLAST of TCONS_00025256-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 5.646e-94
Identity = 213/587 (36.29%), Postives = 297/587 (50.60%), Query Frame = 0 
Query:   56 FATGDDQIVDEYDFVIIGAGSAGAVVANRLSENKSWKVLLLEAG-----GGETMLS---EIPATTVLNF-NTSIDWSFLSEPAN--DGKTSTIFKNGQLVMPRGKVLGGSSTINVMGYTRGNKRDYDLWEEQGNPGWSYEDVLPYFKKSEDQTNEKLTKDTKYHSTGGYLTIEDVE-KADVFVKLMDGFSKI-LPENKDYNGAKQSGTVFYQNTIRNGQRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAEGVVYKKNGKSMTVKAKKEVILSAGAFGSPQILMLSGVGPKEELEKHGISIIKELQ-VGYNLQDHVNVFSHMIFNESIELPS------KEVISFDTFKEYY-EQRTGHLRSNGAGLGMFVPLSEEAKSKDWPEIQSHFLLQLMTDVADTQWIFKYNEEFWNNVLLRELEGKHGVTYFNCLLRPKSRGRVKLRSNDTQDHPRIIPNYFTHPDDLNTFIESFKFGKKLAATLPQYNASIVDLKDPACIEYASGSDDYYRCTAVRGASTLYHPVGTCKMGPHTDDQAVVDSRLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADMIK 619
             A+   +  DEY +V++GAGSAG V+A RL+E+ + +VLLLEAG      G   LS    +PA  V N  +   +W + +E     DG+         L  PRG+V GGSS++N M Y RG+  DY+ W+ QG  GW Y   LPYF+K++          ++Y    G L +   +    +    ++   +   P  +D NG +Q G  +   TI  G+R S A AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA  SPQ+LMLSG+G  ++L+K GI ++  L  VG NLQDH+ ++        I L S      K  I  +   ++  E  T HL + G     F+           P+IQ HFL    + V D   +    E +  +V                 +R  S G +KLRS + QDHP I PNY +   D+  F    K  +++ A          +L+  + I+     D + R  A     + YHP  TCKMG  +D  AVVD + +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAAD+IK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE----LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGG-----FI---RSQPGVPHPDIQFHFL---PSQVIDHGRVPTQQEAYQVHV---------------GPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKA----DSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00025256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH5.646e-9436.29Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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