TCONS_00025256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025256
Unique NameTCONS_00025256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025256 ID=TCONS_00025256|Name=TCONS_00025256|organism=Clytia hemisphaerica|type=transcript|length=2168bp
TAAACAACGTAGTTTTGAATACTCGTGAACGAAAGGAGCAAATTAAACCA
TGGGTTGGATAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTAC
TACATTTACAAGATTGTAaaagcaaactttttgatcttTGTTATAATCAC
GAGTCAGATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAATC
CTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATAT
GATTTTGTGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCG
TTTAAGTGAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTG
GGGAAACCATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAAC
ACATCCATTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGAC
TTCAACAATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTTC
TTGGAGGGTCAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAAA
CGAGATTATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGA
AGATGTGTtaccatatttcaaaaaatctgaagACCAAACCAATGAAAAGC
TTACCAAAGATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGAA
GATGTAGAAAAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTAA
GATTTTACCGGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACTG
TATTTTATCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAA
GCTTACCTCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCACA
TGTTCAAAAGATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTTG
TTTATAAGAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTT
ATCTTGTCTGCTGGTGCTTTTGGCTCTCCTCAGATCTTAATGTTATCAGG
AGTTGGTCCAAAGGAGGAATTGGagaaacatggaatttcgatcATCAAAG
AACTTCAAGTTGGATACAATTTACAAGATCACGTGAACGTTTTTTCGCAT
ATGATTTTCAATGAGTCTATTGAACTTCCATCCAAAGAGGTTATTTCGTT
CGACACATTCAAAGAATACTATGAACAAAGAACAGGCCATCTCAGGAGTA
ATGGCGCAGGTCTTGGGATGTTTGTTCCTTTGTCTGAAGAAGCCAAATCT
AAAGATTGGCCAGAGATTCAATCACATTTTTTACTTCAACTAATGACGGA
TGTCGCTGATACTCAATGGATTTTCAAATACAATGAAGAATTTTGGAATA
ATGTTTTGCTTCGGGAGCTAGAAGGGAAACATGGTGTAACCTACTTTAAT
TGTCTCTTGCGACCAAAAAGCAGAGGACGCGTCAAGTTAAGGAGCAACGA
CACTCAAGACCATCCACGAATCATTCCGAACTATTTCACCCACCCTGACG
ACCTGAATACCTTCATTGAATCTTTCAAATTCGGAAAGAAACTAGCAGCA
ACATTACCACAATACAATGCATCGATTGTCGACTTGAAGGATCCGGCATG
CATTGAATATGCATCAGGTTCAGATGACTATTACCGATGTACAGCGGTTC
GAGGAGCATCAACACTCTACCATCCAGTGGGTACGTGCAAGATGGGACCC
CATACTGATGATCAAGCAGTTGTAGATTCAAGATTGAAAGTTTATGGTAT
CAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTG
GAAATACTAATGCACCTACAATAATGATCGCTGAAAAAGCTGCTGATATG
ATCAAAGAGGACTGGAAAGACAAATAATGAAAAGCTATCACATCAAATGG
AGGACAGTGCTGTATTTTTTGGAGTAATTCTATGATTTCCTAATGATTCT
TGATACTTAGTTTTAGCATTTTGTATATTTATGAGCTGGTCAGGGAAAGT
TATGACGAGAGGGGGGAAGGTCCTATTCCGAAGAGTATACAATTTTCCCC
AGAAAGCCTCTTCTACCATTTACAAATCATCTAaataatgacgtaatgtt
tcgagctccaaccctgac
Run BLAST on NCBI

protein sequence of TCONS_00025256-protein

>TCONS_00025256-protein ID=TCONS_00025256-protein|Name=TCONS_00025256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp
MGWIKKTFIFALPILSYYIYKIVKANFLIFVIITSQIYPRLPIKNFAKLN
PDIADFATGDDQIVDEYDFVIIGAGSAGAVVANRLSENKSWKVLLLEAGG
GETMLSEIPATTVLNFNTSIDWSFLSEPANDGKTSTIFKNGQLVMPRGKV
LGGSSTINVMGYTRGNKRDYDLWEEQGNPGWSYEDVLPYFKKSEDQTNEK
LTKDTKYHSTGGYLTIEDVEKADVFVKLMDGFSKILPENKDYNGAKQSGT
VFYQNTIRNGQRCSTAKAYLKPKRSNLHVSPFSHVQKILIDPETKTAEGV
VYKKNGKSMTVKAKKEVILSAGAFGSPQILMLSGVGPKEELEKHGISIIK
ELQVGYNLQDHVNVFSHMIFNESIELPSKEVISFDTFKEYYEQRTGHLRS
NGAGLGMFVPLSEEAKSKDWPEIQSHFLLQLMTDVADTQWIFKYNEEFWN
NVLLRELEGKHGVTYFNCLLRPKSRGRVKLRSNDTQDHPRIIPNYFTHPD
DLNTFIESFKFGKKLAATLPQYNASIVDLKDPACIEYASGSDDYYRCTAV
RGASTLYHPVGTCKMGPHTDDQAVVDSRLKVYGIKGLRVVDASIMPTIVS
GNTNAPTIMIAEKAADMIKEDWKDK
Run BLAST on NCBI

transcript from alignment at sc0000529:203338..207286+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025256 ID=TCONS_00025256|Name=TCONS_00025256|organism=Clytia hemisphaerica|type=transcript|length=3949bp|location=Sequence derived from alignment at sc0000529:203338..207286+ (Clytia hemisphaerica)
TAAACAACGTAGTTTTGAATACTCGTGAACGAAAGGAGCAAATTAAACCA
TGGGTTGGATAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTAC
TACATTTACAAGATTGTAaaagcaaactttttgatcttTGTTATAATCAC
GAGTCAGATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAATC
CTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATAT
GATTTTGTGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCG
TTTAAGTGAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTG
GGGAAACCATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAAC
ACATCCATTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGAC
TTCAACAATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTTC
TTGGAGGGTCAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAAA
CGAGATTATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGA
AGATGTGTtaccatatttcaaaaaatctgaagACCAAACCAATGAAAAGC
TTACCAAAGATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGAA
GATGTAGAAAAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTAA
GATTTTACCGGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACTG
TATTTTATCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAA
GCTTACCTCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCACA
TGTTCAAAAGATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTTG
TTTATAAGAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTT
ATCTTGTCTGCTGGTGCTTTTGGCTCTCCTCAGGTAATAATTGTGTTGTT
AAAAAGAATAGTATTTCCCTGTGTATCTTTAAGTGCCAAAACTCTCGAAA
CCCTAAGTTTGGACAATACTGCaaatcttgtttttattaaacCTCATCAA
AACGTCAAGCCTGGAATTACTAGGTAATTTAGTTTGATTTTCTCTCATTT
TAGATCTTAATGTTATCAGGAGTTGGTCCAAAGGAGGAATTGGagaaaca
tggaatttcgatcATCAAAGAACTTCAAGTTGGATACAATTTACAAGATC
ACGTGAACGTTTTTTCGCATATGATTTTCAATGAGTCTATTGAACTTCCA
TCCAAAGAGTAAGTTTGATAATGTCATAAAACTTAGGACACTGAATATTT
CTAGGACTGAATTATGGAATGCTCTGCTCCATTGCCCTGTCGTGGAAATT
ACCCTTCCAAAACTTGAGCTGTAGTCATTAACTTCCGTAGCTAGAGGTCA
AAAAAGGCATCTATAcatcatttttatcaatattagGGTTTCAATATCCT
GCTTTATGTATGGAATTCAtacatttcaaaattccattgaaaCATGACCA
AGACGGCATTGTTTACTTTCAGGGTTATTTCGTTCGACACATTCAAAGAA
TACTATGAACAAAGAACAGGCCATCTCAGGAGTAATGGCGCAGGTCTTGG
GATGTTTGTTCCTTTGTCTGAAGAAGCCAAATCTAAAGATTGGCCAGAGA
TTCAATCACATTTTTTACTTCAACTAATGACGGATGTCGCTGATACTCAA
TGGATTTTCAAATACAATGAAGAATTTTGGAATAATGTTTTGCTTCGGGA
GCTAGAAGGGAAACATGGTGTAACCTACTTTAATTGTCTCTTGCGACCAA
AAAGCAGgtagtttttttatatatttctaaaaaatacacccctgtatcac
aggcCCGATGAGACTCCACCCCACAAGAAAATTTTGTCGAGATTTCGTCC
CTGGTGggaaaaatgtataatttgacTGAAAAGTGTCCCAACAGAGttct
gagaaaggggtgtaaaaataTTGTAATAGAATAAATATATTGAAggtgag
accaatttgattagttgttttacgggcccgaccaaCCCTGACATTCCAAA
AATCAGAATAaagataaaattgattttggtagtacatttttatttttatt
gttttccagaatgccaaattttcaaaattttggtagtttttcaaggtttt
gagaatttaatgttcaatttttcattttatccataaaTTTGAGCTTTCTG
TGTCTTTTATTTTCTATTATGCATTTTTGTCTAGATgaagtagtttttgc
tgcctttttaggagattttagaGATGAAATTCTcctttaagttttatttt
ttctccgaccgaccgaccctcttttttgggtagcttcgcccgtaaaacaa
caaattaaattggcctcgcctgaGAAAAAGAGTTTAACTTGAACCTAGAC
AAAAACAAACTGATTGGAATCCTTggaaccaaaacaaaattaGGGCAAAT
TTTTCTATGCAAGTTATTTGACTCAGAAATTTGGGAATCGGAATAAAATA
GCCTTCGTTTtactcgaaaaaaaatttcacgttTCTTCGGTGAATAgttt
tttagaaatcaaaagttgaaagtTCATTGCGTTCTTTTCTGGCCCATCCG
GTATGACGGGTACAAATAATATCTTCAAATGATTGATCTCTGCTTTCCCC
CAAAGAGCTCCTTCAGTTTGCGTTAAAAACAAACGAAATACCACTCTACT
TTTAGAGGACGCGTCAAGTTAAGGAGCAACGACACTCAAGACCATCCACG
AATCATTCCGAACTATTTCACCCACCCTGACGACCTGAATACCTTCATTG
AATCTTTCAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATANTCC
GAACTATTTCACCCACCCTGACGACCTGAATACCTTCATTGAATCTTTCA
AATTCGGAAAGAAACTTGCAGCAACATTACCACAATACAATGCATCGATT
GTCGACTTGAAGGATCCGGCATGCATTGAATATGCATCAGGTTTGTCATT
ATGTCATCGTCATTAATAATACAGTTTTATCAAGTGTGATTATTTTTGTT
GAATATACGATGGAAAGATAAAAGTTTGCGTAATTGACGGTGAATAGTTG
AAAATTCACGGTAATTTTCTGATTTGATTATGCAGAGTGGTCACAACGGA
AAATTTTCCTATTCTTCTTTTAGTACGCTTAGACCAAAATGAAATATTGC
TATAGTCTAACACCCTTAACTATGCCTGAAATGATATatcattgaaaaga
aattccTTTGGCAATTTTCCCTGTTTTTGTNACTATGCCTGAAATGATAT
atcattgaaaagaaattccTTTGGGAATTTCCCCTGTTTTTTCTTCAGGT
TCAGATGACTATTACCGATGTACAGCGGTTCGAGGAGCATCAACACTCTA
CCATCCAGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAG
TTGTAGATTCAAGATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTC
GATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTAC
AATAATGATCGCTGAAAAAGCTGCTGATATGATCAAAGAGGACTGGAAAG
ACAAATAATGAAAAGCTATCACATCAAATGGAGGACAGTGCTGTATTTTT
TGGAGTAATTCTATGATTTCCTAATGATTCTTGATACTTAGTTTTAGCAT
TTTGTATATTTATGAGCTGGTCAGGGAAAGTTATGACGAGAGGGGGGAAG
GTCCTATTCCGAAGAGTATACAATTTTCCCCAGAAAGCCTCTTCTACCAT
TTACAAATCATCTAaataatgacgtaatgtttcgagctccaaccctgac

Coding sequence (CDS) from alignment at sc0000529:203338..207286+

>TCONS_00025256 ID=TCONS_00025256|Name=TCONS_00025256|organism=Clytia hemisphaerica|type=CDS|length=11268bp|location=Sequence derived from alignment at sc0000529:203338..207286+ (Clytia hemisphaerica)
ATGGGTTGGATAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTA
CTACATTTACAAGATTGTAaaagcaaactttttgatcttTGTTATAATCA
CGAGTCAGATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAAT
CCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATA
TGATTTTGTGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACC
GTTTAAGTGAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGT
GGGGAAACCATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAA
CACATCCATTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGA
CTTCAACAATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTT
CTTGGAGGGTCAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAA
ACGAGATTATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATG
AAGATGTGTtaccatatttcaaaaaatctgaagACCAAACCAATGAAAAG
CTTACCAAAGATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGA
AGATGTAGAAAAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTA
AGATTTTACCGGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACT
GTATTTTATCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAA
AGCTTACCTCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCAC
ATGTTCAAAAGATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTT
GTTTATAAGAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGT
TATCTTGTCTGCTGGTGCTTTTGGCTCTCCTCAGATCTTAATGTTATCAG
GAGTTGGTCCAAAGGAGGAATTGGagaaacatggaatttcgatcATCAAA
GAACTTCAAGTTGGATACAATTTACAAGATCACGTGAACGTTTTTTCGCA
TATGATTTTCAATGAGTCTATTGAACTTCCATCCAAAGAGGTTATTTCGT
TCGACACATTCAAAGAATACTATGAACAAAGAACAGGCCATCTCAGGAGT
AATGGCGCAGGTCTTGGGATGTTTGTTCCTTTGTCTGAAGAAGCCAAATC
TAAAGATTGGCCAGAGATTCAATCACATTTTTTACTTCAACTAATGACGG
ATGTCGCTGATACTCAATGGATTTTCAAATACAATGAAGAATTTTGGAAT
AATGTTTTGCTTCGGGAGCTAGAAGGGAAACATGGTGTAACCTACTTTAA
TTGTCTCTTGCGACCAAAAAGCAGAGGACGCGTCAAGTTAAGGAGCAACG
ACACTCAAGACCATCCACGAATCATTCCGAACTATTTCACCCACCCTGAC
GACCTGAATACCTTCATTGAATCTTTCAAATTCGGAAAGAAACTAGCAGC
AACATTACCACAATACAATGCATCGATTGTCGACTTGAAGGATCCGGCAT
GCATTGAATATGCATCAGGTTCAGATGACTATTACCGATGTACAGCGGTT
CGAGGAGCATCAACACTCTACCATCCAGTGGGTACGTGCAAGATGGGACC
CCATACTGATGATCAAGCAGTTGTAGATTCAAGATTGAAAGTTTATGGTA
TCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGT
GGAAATACTAATGCACCTACAATAATGATCGCTGAAAAAGCTGCTGATAT
GATCAAAGAGGACTGGAAAGACAAATAAATGGGTTGGATAAAGAAAACCT
TCATCTTTGCCCTTCCAATACTTTCTTACTACATTTACAAGATTGTAaaa
gcaaactttttgatcttTGTTATAATCACGAGTCAGATTTACCCAAGACT
TCCAATCAAGAATTTCGCAAAGTTGAATCCTGACATTGCAGATTTTGCGA
CAGGAGATGATCAAATAGTTGATGAATATGATTTTGTGATAATTGGTGCA
GGATCTGCAGGAGCTGTTGTTGCTAACCGTTTAAGTGAGAACAAATCATG
GAAAGTTCTTCTGCTGGAAGCTGGTGGTGGGGAAACCATGCTGAGTGAGA
TCCCAGCAACAACAGTTCTTAACTTCAACACATCCATTGATTGGTCCTTT
TTATCAGAGCCGGCCAATGATGGAAAGACTTCAACAATCTTTAAAAATGG
ACAACTGGTCATGCCAAGGGGAAAAGTTCTTGGAGGGTCAAGCACCATCA
ATGTGATGGGTTACACACGTGGTAATAAACGAGATTATGATTTGTGGGAG
GAGCAAGGAAACCCAGGATGGAGTTATGAAGATGTGTtaccatatttcaa
aaaatctgaagACCAAACCAATGAAAAGCTTACCAAAGATACAAAGTACC
ATTCAACAGGCGGCTATCTTACCATTGAAGATGTAGAAAAAGCTgatgtt
tttgtgaaattgatgGACGGCTTTAGTAAGATTTTACCGGAGAATAAGGA
TTATAATGGTGCAAAACAATCTGGAACTGTATTTTATCAAAACACGATCA
GGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGA
TCAAATCTCCACGTCAGTCCTTTTTCACATGTTCAAAAGATTTTGATAGA
TCCTGAAACGAAAACAGCCGAAGGTGTTGTTTATAAGAAGAATGGAAAAT
CAATGACAGTCAAAGCAAAGAAAGAAGTTATCTTGTCTGCTGGTGCTTTT
GGCTCTCCTCAGATCTTAATGTTATCAGGAGTTGGTCCAAAGGAGGAATT
GGagaaacatggaatttcgatcATCAAAGAACTTCAAGTTGGATACAATT
TACAAGATCACGTGAACGTTTTTTCGCATATGATTTTCAATGAGTCTATT
GAACTTCCATCCAAAGAGGTTATTTCGTTCGACACATTCAAAGAATACTA
TGAACAAAGAACAGGCCATCTCAGGAGTAATGGCGCAGGTCTTGGGATGT
TTGTTCCTTTGTCTGAAGAAGCCAAATCTAAAGATTGGCCAGAGATTCAA
TCACATTTTTTACTTCAACTAATGACGGATGTCGCTGATACTCAATGGAT
TTTCAAATACAATGAAGAATTTTGGAATAATGTTTTGCTTCGGGAGCTAG
AAGGGAAACATGGTGTAACCTACTTTAATTGTCTCTTGCGACCAAAAAGC
AGAGGACGCGTCAAGTTAAGGAGCAACGACACTCAAGACCATCCACGAAT
CATTCCGAACTATTTCACCCACCCTGACGACCTGAATACCTTCATTGAAT
CTTTCAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATACAATGCA
TCGATTGTCGACTTGAAGGATCCGGCATGCATTGAATATGCATCAGGTTC
AGATGACTATTACCGATGTACAGCGGTTCGAGGAGCATCAACACTCTACC
ATCCAGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAGTT
GTAGATTCAAGATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCGA
TGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAA
TAATGATCGCTGAAAAAGCTGCTGATATGATCAAAGAGGACTGGAAAGAC
AAATAAATGGGTTGGATAAAGAAAACCTTCATCTTTGCCCTTCCAATACT
TTCTTACTACATTTACAAGATTGTAaaagcaaactttttgatcttTGTTA
TAATCACGAGTCAGATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAG
TTGAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTTGA
TGAATATGATTTTGTGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTG
CTAACCGTTTAAGTGAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCT
GGTGGTGGGGAAACCATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAA
CTTCAACACATCCATTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATG
GAAAGACTTCAACAATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGA
AAAGTTCTTGGAGGGTCAAGCACCATCAATGTGATGGGTTACACACGTGG
TAATAAACGAGATTATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGA
GTTATGAAGATGTGTtaccatatttcaaaaaatctgaagACCAAACCAAT
GAAAAGCTTACCAAAGATACAAAGTACCATTCAACAGGCGGCTATCTTAC
CATTGAAGATGTAGAAAAAGCTgatgtttttgtgaaattgatgGACGGCT
TTAGTAAGATTTTACCGGAGAATAAGGATTATAATGGTGCAAAACAATCT
GGAACTGTATTTTATCAAAACACGATCAGGAATGGCCAGAGATGCAGTAC
AGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTT
TTTCACATGTTCAAAAGATTTTGATAGATCCTGAAACGAAAACAGCCGAA
GGTGTTGTTTATAAGAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAA
AGAAGTTATCTTGTCTGCTGGTGCTTTTGGCTCTCCTCAGATCTTAATGT
TATCAGGAGTTGGTCCAAAGGAGGAATTGGagaaacatggaatttcgatc
ATCAAAGAACTTCAAGTTGGATACAATTTACAAGATCACGTGAACGTTTT
TTCGCATATGATTTTCAATGAGTCTATTGAACTTCCATCCAAAGAGGTTA
TTTCGTTCGACACATTCAAAGAATACTATGAACAAAGAACAGGCCATCTC
AGGAGTAATGGCGCAGGTCTTGGGATGTTTGTTCCTTTGTCTGAAGAAGC
CAAATCTAAAGATTGGCCAGAGATTCAATCACATTTTTTACTTCAACTAA
TGACGGATGTCGCTGATACTCAATGGATTTTCAAATACAATGAAGAATTT
TGGAATAATGTTTTGCTTCGGGAGCTAGAAGGGAAACATGGTGTAACCTA
CTTTAATTGTCTCTTGCGACCAAAAAGCAGAGGACGCGTCAAGTTAAGGA
GCAACGACACTCAAGACCATCCACGAATCATTCCGAACTATTTCACCCAC
CCTGACGACCTGAATACCTTCATTGAATCTTTCAAATTCGGAAAGAAACT
AGCAGCAACATTACCACAATACAATGCATCGATTGTCGACTTGAAGGATC
CGGCATGCATTGAATATGCATCAGGTTCAGATGACTATTACCGATGTACA
GCGGTTCGAGGAGCATCAACACTCTACCATCCAGTGGGTACGTGCAAGAT
GGGACCCCATACTGATGATCAAGCAGTTGTAGATTCAAGATTGAAAGTTT
ATGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATT
GTCAGTGGAAATACTAATGCACCTACAATAATGATCGCTGAAAAAGCTGC
TGATATGATCAAAGAGGACTGGAAAGACAAATAAATGGGTTGGATAAAGA
AAACCTTCATCTTTGCCCTTCCAATACTTTCTTACTACATTTACAAGATT
GTAaaagcaaactttttgatcttTGTTATAATCACGAGTCAGATTTACCC
AAGACTTCCAATCAAGAATTTCGCAAAGTTGAATCCTGACATTGCAGATT
TTGCGACAGGAGATGATCAAATAGTTGATGAATATGATTTTGTGATAATT
GGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCGTTTAAGTGAGAACAA
ATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTGGGGAAACCATGCTGA
GTGAGATCCCAGCAACAACAGTTCTTAACTTCAACACATCCATTGATTGG
TCCTTTTTATCAGAGCCGGCCAATGATGGAAAGACTTCAACAATCTTTAA
AAATGGACAACTGGTCATGCCAAGGGGAAAAGTTCTTGGAGGGTCAAGCA
CCATCAATGTGATGGGTTACACACGTGGTAATAAACGAGATTATGATTTG
TGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGAAGATGTGTtaccata
tttcaaaaaatctgaagACCAAACCAATGAAAAGCTTACCAAAGATACAA
AGTACCATTCAACAGGCGGCTATCTTACCATTGAAGATGTAGAAAAAGCT
gatgtttttgtgaaattgatgGACGGCTTTAGTAAGATTTTACCGGAGAA
TAAGGATTATAATGGTGCAAAACAATCTGGAACTGTATTTTATCAAAACA
CGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTCAAACCC
AAGAGATCAAATCTCCACGTCAGTCCTTTTTCACATGTTCAAAAGATTTT
GATAGATCCTGAAACGAAAACAGCCGAAGGTGTTGTTTATAAGAAGAATG
GAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTTATCTTGTCTGCTGGT
GCTTTTGGCTCTCCTCAGATCTTAATGTTATCAGGAGTTGGTCCAAAGGA
GGAATTGGagaaacatggaatttcgatcATCAAAGAACTTCAAGTTGGAT
ACAATTTACAAGATCACGTGAACGTTTTTTCGCATATGATTTTCAATGAG
TCTATTGAACTTCCATCCAAAGAGGTTATTTCGTTCGACACATTCAAAGA
ATACTATGAACAAAGAACAGGCCATCTCAGGAGTAATGGCGCAGGTCTTG
GGATGTTTGTTCCTTTGTCTGAAGAAGCCAAATCTAAAGATTGGCCAGAG
ATTCAATCACATTTTTTACTTCAACTAATGACGGATGTCGCTGATACTCA
ATGGATTTTCAAATACAATGAAGAATTTTGGAATAATGTTTTGCTTCGGG
AGCTAGAAGGGAAACATGGTGTAACCTACTTTAATTGTCTCTTGCGACCA
AAAAGCAGAGGACGCGTCAAGTTAAGGAGCAACGACACTCAAGACCATCC
ACGAATCATTCCGAACTATTTCACCCACCCTGACGACCTGAATACCTTCA
TTGAATCTTTCAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATAC
AATGCATCGATTGTCGACTTGAAGGATCCGGCATGCATTGAATATGCATC
AGGTTCAGATGACTATTACCGATGTACAGCGGTTCGAGGAGCATCAACAC
TCTACCATCCAGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAA
GCAGTTGTAGATTCAAGATTGAAAGTTTATGGTATCAAAGGATTACGTGT
TGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCAC
CTACAATAATGATCGCTGAAAAAGCTGCTGATATGATCAAAGAGGACTGG
AAAGACAAATAAATGGGTTGGATAAAGAAAACCTTCATCTTTGCCCTTCC
AATACTTTCTTACTACATTTACAAGATTGTAaaagcaaactttttgatct
tTGTTATAATCACGAGTCAGATTTACCCAAGACTTCCAATCAAGAATTTC
GCAAAGTTGAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAAT
AGTTGATGAATATGATTTTGTGATAATTGGTGCAGGATCTGCAGGAGCTG
TTGTTGCTAACCGTTTAAGTGAGAACAAATCATGGAAAGTTCTTCTGCTG
GAAGCTGGTGGTGGGGAAACCATGCTGAGTGAGATCCCAGCAACAACAGT
TCTTAACTTCAACACATCCATTGATTGGTCCTTTTTATCAGAGCCGGCCA
ATGATGGAAAGACTTCAACAATCTTTAAAAATGGACAACTGGTCATGCCA
AGGGGAAAAGTTCTTGGAGGGTCAAGCACCATCAATGTGATGGGTTACAC
ACGTGGTAATAAACGAGATTATGATTTGTGGGAGGAGCAAGGAAACCCAG
GATGGAGTTATGAAGATGTGTtaccatatttcaaaaaatctgaagACCAA
ACCAATGAAAAGCTTACCAAAGATACAAAGTACCATTCAACAGGCGGCTA
TCTTACCATTGAAGATGTAGAAAAAGCTgatgtttttgtgaaattgatgG
ACGGCTTTAGTAAGATTTTACCGGAGAATAAGGATTATAATGGTGCAAAA
CAATCTGGAACTGTATTTTATCAAAACACGATCAGGAATGGCCAGAGATG
CAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTCCACGTCA
GTCCTTTTTCACATGTTCAAAAGATTTTGATAGATCCTGAAACGAAAACA
GCCGAAGGTGTTGTTTATAAGAAGAATGGAAAATCAATGACAGTCAAAGC
AAAGAAAGAAGTTATCTTGTCTGCTGGTGCTTTTGGCTCTCCTCAGATCT
TAATGTTATCAGGAGTTGGTCCAAAGGAGGAATTGGagaaacatggaatt
tcgatcATCAAAGAACTTCAAGTTGGATACAATTTACAAGATCACGTGAA
CGTTTTTTCGCATATGATTTTCAATGAGTCTATTGAACTTCCATCCAAAG
AGGTTATTTCGTTCGACACATTCAAAGAATACTATGAACAAAGAACAGGC
CATCTCAGGAGTAATGGCGCAGGTCTTGGGATGTTTGTTCCTTTGTCTGA
AGAAGCCAAATCTAAAGATTGGCCAGAGATTCAATCACATTTTTTACTTC
AACTAATGACGGATGTCGCTGATACTCAATGGATTTTCAAATACAATGAA
GAATTTTGGAATAATGTTTTGCTTCGGGAGCTAGAAGGGAAACATGGTGT
AACCTACTTTAATTGTCTCTTGCGACCAAAAAGCAGAGGACGCGTCAAGT
TAAGGAGCAACGACACTCAAGACCATCCACGAATCATTCCGAACTATTTC
ACCCACCCTGACGACCTGAATACCTTCATTGAATCTTTCAAATTCGGAAA
GAAACTAGCAGCAACATTACCACAATACAATGCATCGATTGTCGACTTGA
AGGATCCGGCATGCATTGAATATGCATCAGGTTCAGATGACTATTACCGA
TGTACAGCGGTTCGAGGAGCATCAACACTCTACCATCCAGTGGGTACGTG
CAAGATGGGACCCCATACTGATGATCAAGCAGTTGTAGATTCAAGATTGA
AAGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCA
ACCATTGTCAGTGGAAATACTAATGCACCTACAATAATGATCGCTGAAAA
AGCTGCTGATATGATCAAAGAGGACTGGAAAGACAAATAAATGGGTTGGA
TAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTACTACATTTAC
AAGATTGTAaaagcaaactttttgatcttTGTTATAATCACGAGTCAGAT
TTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAATCCTGACATTG
CAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATATGATTTTGTG
ATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCGTTTAAGTGA
GAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTGGGGAAACCA
TGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAACACATCCATT
GATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGACTTCAACAAT
CTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTTCTTGGAGGGT
CAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAAACGAGATTAT
GATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGAAGATGTGTt
accatatttcaaaaaatctgaagACCAAACCAATGAAAAGCTTACCAAAG
ATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGAAGATGTAGAA
AAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTAAGATTTTACC
GGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACTGTATTTTATC
AAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTC
AAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCACATGTTCAAAA
GATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTTGTTTATAAGA
AGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTTATCTTGTCT
GCTGGTGCTTTTGGCTCTCCTCAGATCTTAATGTTATCAGGAGTTGGTCC
AAAGGAGGAATTGGagaaacatggaatttcgatcATCAAAGAACTTCAAG
TTGGATACAATTTACAAGATCACGTGAACGTTTTTTCGCATATGATTTTC
AATGAGTCTATTGAACTTCCATCCAAAGAGGTTATTTCGTTCGACACATT
CAAAGAATACTATGAACAAAGAACAGGCCATCTCAGGAGTAATGGCGCAG
GTCTTGGGATGTTTGTTCCTTTGTCTGAAGAAGCCAAATCTAAAGATTGG
CCAGAGATTCAATCACATTTTTTACTTCAACTAATGACGGATGTCGCTGA
TACTCAATGGATTTTCAAATACAATGAAGAATTTTGGAATAATGTTTTGC
TTCGGGAGCTAGAAGGGAAACATGGTGTAACCTACTTTAATTGTCTCTTG
CGACCAAAAAGCAGAGGACGCGTCAAGTTAAGGAGCAACGACACTCAAGA
CCATCCACGAATCATTCCGAACTATTTCACCCACCCTGACGACCTGAATA
CCTTCATTGAATCTTTCAAATTCGGAAAGAAACTAGCAGCAACATTACCA
CAATACAATGCATCGATTGTCGACTTGAAGGATCCGGCATGCATTGAATA
TGCATCAGGTTCAGATGACTATTACCGATGTACAGCGGTTCGAGGAGCAT
CAACACTCTACCATCCAGTGGGTACGTGCAAGATGGGACCCCATACTGAT
GATCAAGCAGTTGTAGATTCAAGATTGAAAGTTTATGGTATCAAAGGATT
ACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTA
ATGCACCTACAATAATGATCGCTGAAAAAGCTGCTGATATGATCAAAGAG
GACTGGAAAGACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014187XLOC_014187Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025256-proteinTCONS_00025256-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025256-exon-sc0000529-1491911889:203338..204370TCONS_00025256-exon-sc0000529-1491911889:203338..204370Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:203338..204370TCONS_00025256-exon-sc0000529-1510915933:203338..204370Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:203338..204370TCONS_00025256-exon-sc0000529-1575043694:203338..204370Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1491911889:204541..204695TCONS_00025256-exon-sc0000529-1491911889:204541..204695Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:204541..204695TCONS_00025256-exon-sc0000529-1510915933:204541..204695Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:204541..204695TCONS_00025256-exon-sc0000529-1575043694:204541..204695Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1491911889:204960..205244TCONS_00025256-exon-sc0000529-1491911889:204960..205244Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:204960..205244TCONS_00025256-exon-sc0000529-1510915933:204960..205244Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:204960..205244TCONS_00025256-exon-sc0000529-1575043694:204960..205244Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1491911889:206143..206271TCONS_00025256-exon-sc0000529-1491911889:206143..206271Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:206143..206271TCONS_00025256-exon-sc0000529-1510915933:206143..206271Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:206143..206271TCONS_00025256-exon-sc0000529-1575043694:206143..206271Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1491911889:206363..206427TCONS_00025256-exon-sc0000529-1491911889:206363..206427Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:206363..206427TCONS_00025256-exon-sc0000529-1510915933:206363..206427Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:206363..206427TCONS_00025256-exon-sc0000529-1575043694:206363..206427Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1491911889:206786..207286TCONS_00025256-exon-sc0000529-1491911889:206786..207286Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1510915933:206786..207286TCONS_00025256-exon-sc0000529-1510915933:206786..207286Clytia hemisphaericaexon
TCONS_00025256-exon-sc0000529-1575043694:206786..207286TCONS_00025256-exon-sc0000529-1575043694:206786..207286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:203338..207286 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.948916	0.80121	0.771406	0.998281	0.258549	0.0978397	0.151124	0.0698121	0.0465393	0.152986	0.120684	0.37771	4.4081	5.72616	17.6871	23.2189	13.4059	12.8455	4.11315	6.86996	1.1558	1.37648	0.438788	0.611793	0.785344	0.588909	0.206936	0.0312656	1.21323	0.931183
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012132GMC_OxRdtase
IPR000172GMC_OxRdtase_N
IPR007867GMC_OxRtase_C
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
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BLAST of TCONS_00025256 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 7.856e-83
Identity = 213/587 (36.29%), Postives = 297/587 (50.60%), Query Frame = 2 
Query:  215 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKVLLLEAG-----GGETMLS---EIPATTVLNF-NTSIDWSFLSEPAN--DGKTSTIFKNGQLVMPRGKVLGGSSTINVMGYTRGNKRDYDLWEEQGNPGWSYEDVLPYFKKSEDQTNEKLTKDTKYHSTGGYLTIEDVE-KADVFVKLMDGFSKI-LPENKDYNGAKQSGTVFYQNTIRNGQRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAEGVVYKKNGKSMTVKAKKEVILSAGAFGSPQILMLSGVGPKEELEKHGISIIKELQ-VGYNLQDHVNVFSHMIFNESIELPS------KEVISFDTFKEYY-EQRTGHLRSNGAGLGMFVPLSEEAKSKDWPEIQSHFLLQLMTDVADTQWIFKYNEEFWNNVLLRELEGKHGVTYFNCLLRPKSRGRVKLRSNDTQDHPRIIPNYFTHPDDLNTFIESFKFGKKLAATLPQYNASIVDLKDPACIEYASGSDDYYRCTAVRGASTLYHPVGTCKMGPHTDDQAVVDSRLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADMIK 1906
             A+   +  DEY +V++GAGSAG V+A RL+E+ + +VLLLEAG      G   LS    +PA  V N  +   +W + +E     DG+         L  PRG+V GGSS++N M Y RG+  DY+ W+ QG  GW Y   LPYF+K++          ++Y    G L +   +    +    ++   +   P  +D NG +Q G  +   TI  G+R S A AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA  SPQ+LMLSG+G  ++L+K GI ++  L  VG NLQDH+ ++        I L S      K  I  +   ++  E  T HL + G     F+           P+IQ HFL    + V D   +    E +  +V                 +R  S G +KLRS + QDHP I PNY +   D+  F    K  +++ A          +L+  + I+     D + R  A     + YHP  TCKMG  +D  AVVD + +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAAD+IK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE----LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGG-----FI---RSQPGVPHPDIQFHFL---PSQVIDHGRVPTQQEAYQVHV---------------GPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKA----DSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00025256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH7.856e-8336.29Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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