TCONS_00025992-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025992-protein
Unique NameTCONS_00025992-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025992-protein ID=TCONS_00025992-protein|Name=TCONS_00025992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=673bp
MVIQPDIPNQDLTDCEYRRKETQIRQQLLANFLQAMREDLAEWISSLSVR
SITQENFLSSLENGVILCQQARLIQRYAEEYSIINKPHNMKIPNREVTYT
EKGAFRGSFISRDNVANFIQWCRGLGIPDVCLFESEDLVLHKNEKSVILT
LLDVARKAFVFGVQPPEIVRFEQEIDQEIEEDKQNEKKGKPPPKPIDLEE
DNNLDTLVRNIVNRCTCYDRFPIKKLSEGKYQFGEQKTLIFVRVMRKHVM
VRIGGGWDTFEHYITKHDPCRTTVAGSIDNNGQSRQTQPPARCTNLLNNS
SSGVSPRRKKSVPDKRETHRTHECMISTTSSDTWSMCSGSSEGSGSTDGR
PKPFGSRKESMMSTSSTETPDTSLHFTKSIEEIDRRLQSMEDRKPTLDMT
IKDPSVYEHRADSWLRHHLNSLKQNRRASDAENLQPMDAYQMKRGYTADV
IERRPKAQKENTRTPKMERRNRAGQVRARSATGTNTPISKSIDQGLNHDR
ISAYSPASNPTPDGFFSSDTLSVSSSTNSLQSLDSHRKSCSEIATQTDDL
FLSPDGSIPSNIPGPLRKKLATVLGSPSKIPRPVMQRSKTMELPSAKLKR
RNSTNSHDRERLNQRAPRMQREKSQPNFRREKSDVGQSSKYKMVQSPGPR
RRESMKKEKPVRVRNGPVLTTQV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014627XLOC_014627Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025992TCONS_00025992Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
IPR003108GAS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008017microtubule binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008017 microtubule binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 36..154
e-value: 1.1E-10
score: 51.5
IPR001715Calponin homology domainPFAMPF00307CHcoord: 35..156
e-value: 2.0E-12
score: 47.1
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 20..196
e-value: 1.9E-27
score: 95.4
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 34..158
score: 13.485
IPR001715Calponin homology domainCDDcd00014CHcoord: 36..151
e-value: 9.24212E-13
score: 64.2543
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 27..175
IPR003108Gas2-related domainSMARTSM00243GAS2coord: 202..274
e-value: 5.6E-38
score: 142.2
IPR003108Gas2-related domainPFAMPF02187GAS2coord: 204..271
e-value: 4.0E-30
score: 103.6
IPR003108Gas2-related domainGENE3D3.30.920.20coord: 197..290
e-value: 9.0E-28
score: 95.7
IPR003108Gas2-related domainPROSITEPS51460GARcoord: 199..271
score: 32.938
IPR003108Gas2-related domainSUPERFAMILY143575GAS2 domain-likecoord: 203..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 456..527
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 573..673

Blast
[Close]
BLAST of TCONS_00025992-protein vs. Swiss-Prot (Human)
Match: GA2L1 (GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.121e-64
Identity = 127/300 (42.33%), Postives = 166/300 (55.33%), Query Frame = 0 
Query:   32 FLQAMREDLAEWISSLSVRSITQENFL--SSLENGVILCQQARLIQRYAEEYSIINKPHNMKIPNREVTYTEKGAFRGSFISRDNVANFIQWCR-GLGIPDVCLFESEDLVLHKNEKSVILTLLDVARKAFVFGVQPPEIVRFEQEIDQEIE------------ED--KQNEKKGKPPPKPIDLEED-NNLDTLVRNIVNRCTCYDRFPIKKLSEGKYQFGEQKTLIFVRVMRKHVMVRIGGGWDTFEHYITKHDPCRTTVAGSIDNNGQSRQTQPPARCTNLLNNSSSGVSPRRKKSVP 313
            +++AM+EDLAEW+++L    +        + L  G  LCQ A  +   A   +              V +       GSF++RDNVA FI WCR  LG+P+V +FE+EDLVL KNEKSV+L LL+VAR+    G+  P +V+FEQEI++E+             ED  +     G P   P     D  NLD LVR I+ RCTC D+FP+ K+SEGKY+ G+   LIFVRV+R HVMVR+GGGWDT EHY+ KHDPCR        ++   R  QP   CT      S   SPR    VP
Sbjct:   25 YVEAMKEDLAEWLNALYGLGLPGGGDGFLTGLATGTTLCQHANAVTEAARALAAARPARG-------VAFQAHSVVPGSFMARDNVATFIGWCRVELGVPEVLMFETEDLVLRKNEKSVVLCLLEVARRGARLGLLAPRLVQFEQEIERELRAAPPAPNAPAAGEDTTETAPAPGTPARGPRMTPSDLRNLDELVREILGRCTCPDQFPMIKVSEGKYRVGDSSLLIFVRVLRSHVMVRVGGGWDTLEHYLDKHDPCRC-------SSTAHRPPQPRV-CTFSPQRVSPTTSPRPASPVP 309
The following BLAST results are available for this feature:
BLAST of TCONS_00025992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GA2L13.121e-6442.33GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1... [more]
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