TCONS_00026068-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026068-protein
Unique NameTCONS_00026068-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026068-protein ID=TCONS_00026068-protein|Name=TCONS_00026068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=921bp
MKMNDINEAEELHKESLEILAKLASSKAEILEDDNVISNFKVSKCLKNAK
ANCKVCQLEKCNGTCDKENQVMVDQAVQTPQKEKTSSGDPVTPTANLKML
VCAASVLTPAVDEIENQKRNLFTDNIGRIHINNIPDSVLLNKLEVPSTLE
PKSKKGQQQQQQLLGRKEKSLGLLCKRFLEIYPEYSSNGTTILLDDVVKL
LSIGRRRVYDIVNVLESMEMMVRQAKNKYLWYGKSRLRITLTKLKALALR
VYGKNFCNVQSDYKLKKHRSSTASKNDRNPMSILTDPQSDASKSGDSDSA
TLPDTSHYQPIQPKPPASPQFESDDLEDTDMEYVDDVTSSIMDYIISNES
TKKENSRSLGILCQKFIMLFMVAENNVVTLDKAARILLNESDEGPAKYKT
KVRRLYDIANILTSIEFLEKTNSYENASKKAAYKWVGLDLKSLDSEDGIK
KAFQSLEFSVTRHSLLAQVPKKPSDLALNTRKLQCRSASAQQLTISQPGK
FDEAFKAKFPRTYSAVAVSSTGNDIKEDPESDGFDISQIEEGEIVDEEKV
KSTGGNESPNQALFKEKLRKLQEEFPDKLPNSDVLFKRLIFEQFEQNLST
AGNSGAKDGKEGQVIHLQTFANNLSTTSQAQPLATTVKVHLETRPNLRRS
LSGDFDENALVSPSKKIKLDSQQQQQLQVTKATTTNTPMINGTQAPLMAL
KPLLSYVASQAAHNVANNQPTNFKISKVPANLITNITAAPKAFHKNLKFD
SKQPCRPILVSSSLSLPKSNGGVYQIIPIHCKPLKTLGDKPIRAVPVVLN
QHTSPQPAANFTGNSPATSQANNVLTMLVRQPIVTVNSPQVIVSPRNQVF
KKQGTEMLSTQQLADKYPEYFTPPHMPNAGKPAANPIIFPKMTPETPSSD
PKCTLNAVQRKLMSFQSEEQR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014669XLOC_014669Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026068TCONS_00026068Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..324
IPR003316E2F/DP family, winged-helix DNA-binding domainSMARTSM01372E2F_TDP_2coord: 166..233
e-value: 4.1E-24
score: 96.1
coord: 354..437
e-value: 1.4E-27
score: 107.6
IPR003316E2F/DP family, winged-helix DNA-binding domainPFAMPF02319E2F_TDPcoord: 167..233
e-value: 3.0E-17
score: 62.3
coord: 356..437
e-value: 3.7E-17
score: 62.0
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 160..236
e-value: 9.0E-20
score: 70.1
coord: 348..440
e-value: 2.7E-19
score: 68.5
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 357..438
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 168..234

Blast
[Close]
BLAST of TCONS_00026068-protein vs. Swiss-Prot (Human)
Match: E2F7 (Transcription factor E2F7 OS=Homo sapiens GN=E2F7 PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.869e-48
Identity = 133/384 (34.64%), Postives = 192/384 (50.00%), Query Frame = 0 
Query:   88 GDPVTPTANLKMLVCAASVLTPAVDE----------IENQKRNLFTDNIGRIHINNIPDSVLLNKLEVPSTLEPKSKKGQQQQQQLLGRKEKSLGLLCKRFLEIYPEY--SSNGTTILLDDVVKLLSIGRRRVYDIVNVLESMEMMVRQAKNKYLWYGKSRLRITLTKLKALA-LRVYGKNFCNVQS------DYKLKKHRSSTASKNDRNPMSILTDPQSDASKSGDSDSATLPDTSHYQPIQPKPPASPQFESDDLEDTDMEYVDDVTSSIMDYIISNESTKKENSR---SLGILCQKFIMLFMVAENNVVTLDKAARILLNESDEGP--AKYKTKVRRLYDIANILTSIEFLEKTNSYENASKKAAYKWVG-LDLKSLDSE 446
             +P TPTANLKML+ AAS   P + +          IEN K + FTD++    ++ + DS +                  + ++Q   RK+KSLGLLC++FL  YP Y  S+  TTI LD+V   L + RRR+YDIVNVLES+ ++ R AKN+Y W+G+  L  TL  L+ L   + Y +    +Q       DYK  + +                       K GD      PD+   Q                               ++D+   +  +   NSR   SL I+ QKF+MLF+V++  +VTLD AA+IL+ ES + P  +K+KTKVRRLYDIAN+LTS+  ++K +  E   +K A+KW+G +D  S D E
Sbjct:   78 AEPWTPTANLKMLISAAS---PDIRDREKKKGLFRPIEN-KDDAFTDSL---QLDVVGDSAV-----------------DEFEKQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLGVERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYLQQKELDLIDYKFGERK-----------------------KDGD------PDSQEQQ-------------------------------LLDFSEPDCPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSSDEE 377
The following BLAST results are available for this feature:
BLAST of TCONS_00026068-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F72.869e-4834.64Transcription factor E2F7 OS=Homo sapiens GN=E2F7 ... [more]
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