TCONS_00026947-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026947-protein
Unique NameTCONS_00026947-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026947-protein ID=TCONS_00026947-protein|Name=TCONS_00026947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MKMKNEKWNRVVINVSGEMFETHERTLERFPETLLGDQGKRHKYFCWKSK
QYFFDRHRQSFDAILYFYQSYGNLSRPNNISFEDFEKECAFFQIPKASME
FLKLKEGIPLENDEEMHPHENQCNSESEENPSRESTQTLREKVWNLLENP
ETSSTARSLAIFSLFTIFISVTLACLETIPDMSKYKHSYVFKDPFFMLEL
VLNSYFLIELIARIIACPDLKEFFKGTLNVIDVIAVVPYFIILCVDITKL
RSLAFLRILRFLRVLRLFRLSKHSARIKIVGAILAESLQDLRLFFVCLMI
IAVFSGSLMYFIENTAENSPFTSIPESMWWALQTVVTLGYGDITPVTIAG
KCYSAIFMVFGAVTISLPVLSIVMKFTTMYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015126XLOC_015126Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026947TCONS_00026947Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 266..274
score: 55.83
coord: 51..61
score: 62.05
coord: 361..372
score: 49.79
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 290..313
score: 26.93
coord: 350..376
score: 36.77
coord: 150..178
score: 41.41
coord: 197..220
score: 30.33
coord: 321..343
score: 57.55
coord: 223..243
score: 46.78
coord: 51..70
score: 58.45
coord: 261..287
score: 38.18
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 9..106
e-value: 5.9E-7
score: 39.1
NoneNo IPR availableGENE3D1.10.287.70coord: 290..340
e-value: 6.4E-14
score: 51.3
NoneNo IPR availableGENE3D1.20.5.110coord: 342..378
e-value: 2.4E-6
score: 26.6
NoneNo IPR availableGENE3D1.20.120.350coord: 154..289
e-value: 6.2E-29
score: 100.0
NoneNo IPR availableGENE3D3.30.710.10coord: 5..121
e-value: 1.2E-18
score: 66.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..135
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 153..376
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 158..380
e-value: 3.4E-32
score: 111.5
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 11..100
e-value: 5.4E-24
score: 84.3
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 9..101

Blast
[Close]
BLAST of TCONS_00026947-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 1.722e-93
Identity = 159/401 (39.65%), Postives = 230/401 (57.36%), Query Frame = 0 
Query:    5 NEKWNRVVINVSGEMFETHERTLERFPETLLGDQGKRHKYFCWKSKQYFFDRHRQSFDAILYFYQSYGNLSRPNNISFEDFEKECAFFQIPKASMEFLKLKEGIPLENDEEMHPHENQCNSESEENPSRESTQTLREKVWNLLENPETSSTARSLAIFSLFTIFISVTLACLETIPDMSKYK----------------HSYVFKDPFFMLELVLNSYFLIELIARIIACPDLKEFFKGTLNVIDVIAVVPYFIILCVDIT---------KLRSLAFLRILRFLRVLRLFRLSKHSARIKIVGAILAESLQDLRLFFVCLMIIAVFSGSLMYFIENTAENSPFTSIPESMWWALQTVVTLGYGDITPVTIAGKCYSAIFMVFGAVTISLPVLSIVMKFTTMY 380
            +E   RVVIN+SG  FET  +TL +FP TLLG+  KR +YF     +YFFDR+R SFDAILY+YQS G L RP N+  + F +E  F+++ + +ME  +  EG   E                EE P  E  +  + +VW L E PE+S  AR +AI S+  I IS+ + CLET+P++   K                +S +F DPFF++E +   +F  EL+ R  ACP   +FFK  +N ID++A++PYFI L  +I          +  SLA LR++R +RV R+F+LS+HS  ++I+G  L  S+++L L    L I  +   S +YF E     S F+SIP++ WWA+ ++ T+GYGD+ PVTI GK   ++  + G +TI+LPV  IV  F   Y
Sbjct:   33 HECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKE----------------EERPLPE--KEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 415
The following BLAST results are available for this feature:
BLAST of TCONS_00026947-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.722e-9339.65Potassium voltage-gated channel subfamily A member... [more]
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