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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026947 ID=TCONS_00026947|Name=TCONS_00026947|organism=Clytia hemisphaerica|type=transcript|length=2069bp
gaaaaataaaggaaatatAGCAAAAATATAGACgcgatattatttttctt
gcacgatgaaataatcaaaacaatagaaCAAGAAATATTGAACTAAACAA
AAGATGCAATAATTTGATAAGGATTTCGTcgaaaaagaactttttgatgG
TCCTTCTTTTTGTTGTACCGAAACTCAAATAGAATATCTTATCTACACTA
CAGGGTATTTTTTTACGAAATATTTGAGGGTTGGGAGAgcaaaaaatatc
tttccaaaagaaTATACCGCACAGTTGAACAAAATGTTGGTCCCTTTTTA
CTAACTTTTACAACAGTGAATTTCACTTTGATACATGTTATTTTTGAGTG
TTATTGCTATTTTTATGATTGTTGCTATCCAGAGATGATACTTAGCCAAG
ACATTGGAAAGAACATTTCCGATATATTGTTGTCAGTGATTTTTGAGATT
GCTGAAAGGAACTACCAAGGTTGAGCGGTACATATTTTGATACACACTGT
ATTTATATCAAGAATTAACAGCTATTATAGACCGACCCTCTAAATAATCG
TACCAACTTTTATCGGATCAATTTCCTACGTCTTGTTCGTTGTTGTCAGT
ACGCTGGAAGGAGCAATTTAATTGGTTGAACGTTAATGGTTTGAATTTGA
ATCAACCTTTATTTATACACACTGTAATTATATCAAGAATTGGTAACCAA
CCATCTAAATCACCGgttaaaatgaagatgaaaaatgaaaaatggaacaG
AGTTGTAATCAATGTTAGTGGTGAAATGTTCGAAACACATGAACGAACCT
TGGAAAGATTTCCTGAAACTCTTCTCGGTGATCAAGGAAAACGACATAAA
TATTTCTGCTGGAAGTCCAAACAATATTTCTTTGATCGACATCGTCAATC
ATTTGATGCCATTTTATATTTCTATCAATCTTATGGTAATTTATCGAGAC
CTAATAATATCAGTTTCGAAGACTTTGAGAAAGAATGCGCTTTCTTTCAA
ATACCGAAAGCTTCTATGGAATTCTTGAAACTGAAAGAGGGAATACCGTT
AGAAAATGACGAAGAGATGCATCCTCATGAAAATCAGTGTAATAGTGAAT
CAGAGGAAAACCCATCCAGAGAATCAACACAAACACTGCGCGAAAAAGTC
TGGAATTTATTGGAAAACCCCGAAACCTCAAGCACAGCTCGTTCACTTGC
TATCTTTTCTTTATTCACTATTTTCATATCAGTTACTTTGGCTTGTTTGG
AGACTATACCGGACATGAGCAAATACAAACATTCATATGTTTTTAAAGAC
CCTTTCTTCATGCTAGAACTGGTATTAAACTCATACTTCCTAATCGAGTT
GATTGCTCGCATCATAGCATGTCCGGatttgaaggaattttttaaaggAA
CTTTGAATGTGATCGACGTTATCGCCGTAGTCCcgtattttatcattcta
tgcGTCGATATTACGAAGCTACGTTCGTTAGCATTCTTACGCATCTTGCG
TTTCCTGCGTGTATTACGGTTGTTCCGGTTATCTAAACATTCTGCCCGGA
TTAAAATTGTTGGTGCTATTTTAGCGGAAAGTTTGCAAGATTTACGTtta
ttttttgtctgtttaATGATTATTGCAGTTTTCTCGGGATCCTTGATGTA
CTTTATCGAAAATACAGCTGAGAATTCACCCTTTACAAGTATACCAGAAA
GTATGTGGTGGGCTTTACAAACAGTCGTTACCCTTGGTTACGGAGATATC
ACCCCGGTTACCATTGCAGGGAAATGTTATTCAGCTATATTTATGGTTTT
CGGCGCCGTAACTATTTCTCTACCTGTATTATCGATTGTTATGAAGTTCA
CAACCATGTACAAATGATTTGAGATGATTTTCTTTGTTCTTGTAATTTTT
ATATTTGACTAGTTTATCGTTGGGTAATTCAAGGTGTTGAGTGTAACAAA
AATTATGCATCAGTGACAATTTTGAGTACTTCATTGCCAgcgaaaacttt
tgaaataagagattttttgtcaaaaaaaagttaacaaaaatcattttcag
tTCCTAGATAAATTGATTT Run BLAST on NCBI protein sequence of TCONS_00026947-protein >TCONS_00026947-protein ID=TCONS_00026947-protein|Name=TCONS_00026947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MKMKNEKWNRVVINVSGEMFETHERTLERFPETLLGDQGKRHKYFCWKSK
QYFFDRHRQSFDAILYFYQSYGNLSRPNNISFEDFEKECAFFQIPKASME
FLKLKEGIPLENDEEMHPHENQCNSESEENPSRESTQTLREKVWNLLENP
ETSSTARSLAIFSLFTIFISVTLACLETIPDMSKYKHSYVFKDPFFMLEL
VLNSYFLIELIARIIACPDLKEFFKGTLNVIDVIAVVPYFIILCVDITKL
RSLAFLRILRFLRVLRLFRLSKHSARIKIVGAILAESLQDLRLFFVCLMI
IAVFSGSLMYFIENTAENSPFTSIPESMWWALQTVVTLGYGDITPVTIAG
KCYSAIFMVFGAVTISLPVLSIVMKFTTMYK Run BLAST on NCBI transcript from alignment at sc0000596:61506..63574 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026947 ID=TCONS_00026947|Name=TCONS_00026947|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at sc0000596:61506..63574 (Clytia hemisphaerica)
AAATCAATTTATCTAGGAactgaaaatgatttttgttaacttttttttga
caaaaaatctcttatttcaaaagttttcgcTGGCAATGAAGTACTCAAAA
TTGTCACTGATGCATAATTTTTGTTACACTCAACACCTTGAATTACCCAA
CGATAAACTAGTCAAATATAAAAATTACAAGAACAAAGAAAATCATCTCA
AATCATTTGTACATGGTTGTGAACTTCATAACAATCGATAATACAGGTAG
AGAAATAGTTACGGCGCCGAAAACCATAAATATAGCTGAATAACATTTCC
CTGCAATGGTAACCGGGGTGATATCTCCGTAACCAAGGGTAACGACTGTT
TGTAAAGCCCACCACATACTTTCTGGTATACTTGTAAAGGGTGAATTCTC
AGCTGTATTTTCGATAAAGTACATCAAGGATCCCGAGAAAACTGCAATAA
TCATtaaacagacaaaaaataaACGTAAATCTTGCAAACTTTCCGCTAAA
ATAGCACCAACAATTTTAATCCGGGCAGAATGTTTAGATAACCGGAACAA
CCGTAATACACGCAGGAAACGCAAGATGCGTAAGAATGCTAACGAACGTA
GCTTCGTAATATCGACgcatagaatgataaaatacgGGACTACGGCGATA
ACGTCGATCACATTCAAAGTTcctttaaaaaattccttcaaatCCGGACA
TGCTATGATGCGAGCAATCAACTCGATTAGGAAGTATGAGTTTAATACCA
GTTCTAGCATGAAGAAAGGGTCTTTAAAAACATATGAATGTTTGTATTTG
CTCATGTCCGGTATAGTCTCCAAACAAGCCAAAGTAACTGATATGAAAAT
AGTGAATAAAGAAAAGATAGCAAGTGAACGAGCTGTGCTTGAGGTTTCGG
GGTTTTCCAATAAATTCCAGACTTTTTCGCGCAGTGTTTGTGTTGATTCT
CTGGATGGGTTTTCCTCTGATTCACTATTACACTGATTTTCATGAGGATG
CATCTCTTCGTCATTTTCTAACGGTATTCCCTCTTTCAGTTTCAAGAATT
CCATAGAAGCTTTCGGTATTTGAAAGAAAGCGCATTCTTTCTCAAAGTCT
TCGAAACTGATATTATTAGGTCTCGATAAATTACCATAAGATTGATAGAA
ATATAAAATGGCATCAAATGATTGACGATGTCGATCAAAGAAATATTGTT
TGGACTTCCAGCAGAAATATTTATGTCGTTTTCCTTGATCACCGAGAAGA
GTTTCAGGAAATCTTTCCAAGGTTCGTTCATGTGTTTCGAACATTTCACC
ACTAACATTGATTACAACTCtgttccatttttcatttttcatcttcattt
taacCGGTGATTTAGATGGTTGGTTACCAATTCTTGATATAATTACAGTG
TGTATAAATAAAGGTTGATTCAAATTCAAACCATTAACGTTCAACCAATT
AAATTGCTCCTTCCAGCGTACTGACAACAACGAACAAGACGTAGGAAATT
GATCCGATAAAAGTTGGTACGATTATTTAGAGGGTCGGTCTATAATAGCT
GTTAATTCTTGATATAAATACAGTGTGTATCAAAATATGTACCGCTCAAC
CTTGGTAGTTCCTTTCAGCAATCTCAAAAATCACTGACAACAATATATCG
GAAATGTTCTTTCCAATGTCTTGGCTAAGTATCATCTCTGGATAGCAACA
ATCATAAAAATAGCAATAACACTCAAAAATAACATGTATCAAAGTGAAAT
TCACTGTTGTAAAAGTTAGTAAAAAGGGACCAACATTTTGTTCAACTGTG
CGGTATAttcttttggaaagatattttttgcTCTCCCAACCCTCAAATAT
TTCGTAAAAAAATACCCTGTAGTGTAGATAAGATATTCTATTTGAGTTTC
GGTACAACAAAAAGAAGGACcatcaaaaagttctttttcgACGAAATCCT
TATCAAATTATTGCATCTTTTGTTTAGTTCAATATTTCTTGttctattgt
tttgattatttcatcgtgcaagaaaaataatatcgcGTCTATATTTTTGC
Tatatttcctttatttttc Coding sequence (CDS) from alignment at sc0000596:61506..63574 >TCONS_00026947 ID=TCONS_00026947|Name=TCONS_00026947|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000596:61506..63574 (Clytia hemisphaerica)
TCATTTGTACATGGTTGTGAACTTCATAACAATCGATAATACAGGTAGAG
AAATAGTTACGGCGCCGAAAACCATAAATATAGCTGAATAACATTTCCCT
GCAATGGTAACCGGGGTGATATCTCCGTAACCAAGGGTAACGACTGTTTG
TAAAGCCCACCACATACTTTCTGGTATACTTGTAAAGGGTGAATTCTCAG
CTGTATTTTCGATAAAGTACATCAAGGATCCCGAGAAAACTGCAATAATC
ATtaaacagacaaaaaataaACGTAAATCTTGCAAACTTTCCGCTAAAAT
AGCACCAACAATTTTAATCCGGGCAGAATGTTTAGATAACCGGAACAACC
GTAATACACGCAGGAAACGCAAGATGCGTAAGAATGCTAACGAACGTAGC
TTCGTAATATCGACgcatagaatgataaaatacgGGACTACGGCGATAAC
GTCGATCACATTCAAAGTTcctttaaaaaattccttcaaatCCGGACATG
CTATGATGCGAGCAATCAACTCGATTAGGAAGTATGAGTTTAATACCAGT
TCTAGCATGAAGAAAGGGTCTTTAAAAACATATGAATGTTTGTATTTGCT
CATGTCCGGTATAGTCTCCAAACAAGCCAAAGTAACTGATATGAAAATAG
TGAATAAAGAAAAGATAGCAAGTGAACGAGCTGTGCTTGAGGTTTCGGGG
TTTTCCAATAAATTCCAGACTTTTTCGCGCAGTGTTTGTGTTGATTCTCT
GGATGGGTTTTCCTCTGATTCACTATTACACTGATTTTCATGAGGATGCA
TCTCTTCGTCATTTTCTAACGGTATTCCCTCTTTCAGTTTCAAGAATTCC
ATAGAAGCTTTCGGTATTTGAAAGAAAGCGCATTCTTTCTCAAAGTCTTC
GAAACTGATATTATTAGGTCTCGATAAATTACCATAAGATTGATAGAAAT
ATAAAATGGCATCAAATGATTGACGATGTCGATCAAAGAAATATTGTTTG
GACTTCCAGCAGAAATATTTATGTCGTTTTCCTTGATCACCGAGAAGAGT
TTCAGGAAATCTTTCCAAGGTTCGTTCATGTGTTTCGAACATTTCACCAC
TAACATTGATTACAACTCtgttccatttttcatttttcatcttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026947-exon-sc0000596-1491911889:61506..63574 | TCONS_00026947-exon-sc0000596-1491911889:61506..63574 | Clytia hemisphaerica | exon |
| TCONS_00026947-exon-sc0000596-1510915933:61506..63574 | TCONS_00026947-exon-sc0000596-1510915933:61506..63574 | Clytia hemisphaerica | exon |
| TCONS_00026947-exon-sc0000596-1575043694:61506..63574 | TCONS_00026947-exon-sc0000596-1575043694:61506..63574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000596 | supercontig | sc0000596:61506..63574 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00026947 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 9.202e-77 Identity = 150/401 (37.41%), Postives = 219/401 (54.61%), Query Frame = 2
Query: 734 NEKWNRVVINVSGEMFETHERTLERFPETLLGDQGKRHKYFCWKSKQYFFDRHRQSFDAILYFYQSYGNLSRPNNISFEDFEKECAFFQIPKASMEFLKLKEGIPLENDEEMHPHENQCXXXXXXXXXXXXTQTLREKVWNLLENPETSSTARSLAIFSLFTIFISVTLACLETIPDMSKYK----------------HSYVFKDPFFMLELVLNSYFLIELIARIIACPDLKEFFKGTLNVIDVIAVVPYFIILCVDITKXXXXXXXXXXXXXXXXXXX---------XXSKHSARIKIVGAILAESLQDLRLFFVCLMIIAVFSGSLMYFIENTAENSPFTSIPESMWWALQTVVTLGYGDITPVTIAGKCYSAIFMVFGAVTISLPVLSIVMKFTTMY 1861
+E RVVIN+SG FET +TL +FP TLLG+ KR +YF +YFFDR+R SFDAILY+YQS G L RP N+ + F +E F+++ + +ME + EG E + + E Q +VW L E PE+S AR +AI S+ I IS+ + CLET+P++ K +S +F DPFF++E + +F EL+ R ACP +FFK +N ID++A++PYFI L +I + L +LR+ +LS+HS ++I+G L S+++L L L I + S +YF E S F+SIP++ WWA+ ++ T+GYGD+ PVTI GK ++ + G +TI+LPV IV F Y
Sbjct: 33 HECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQ------------------RQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 415
The following BLAST results are available for this feature:
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